Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g02037 ATGTTCTCAAAGAGAAGATCTGGTTTGCTGAAGAAGGCAAACGAAATTTCAGTGCTATGCGATGCCGAAGTTGCACTCATCGTCTTCTCTACCAAAGAGGGCTCCGGCAACTCACCTCCAACAGCGGTGAAGGGGCATGCGGCGGTAGCAGCTAGACGTGATAGCAATGGCGACGCCATTCGCGGCGGTGACGACAACTAG 201 0.5323 MFSKRRSGLLKKANEISVLCDAEVALIVFSTKEGSGNSPPTAVKGHAAVAARRDSNGDAIRGGDDN 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g02037 66 ProSiteProfiles MADS-box domain profile. 1 32 IPR002100 GO:0003677|GO:0046983
Adu04g02037 66 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL8 2 32 - -
Adu04g02037 66 PRINTS MADS domain signature 19 40 IPR002100 GO:0003677|GO:0046983
Adu04g02037 66 PRINTS MADS domain signature 4 19 IPR002100 GO:0003677|GO:0046983
Adu04g02037 66 SUPERFAMILY SRF-like 2 33 IPR036879 GO:0003677|GO:0046983
Adu04g02037 66 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 2 31 IPR002100 GO:0003677|GO:0046983
Adu04g02037 66 PANTHER MADS BOX PROTEIN 2 32 - -
Adu04g02037 66 SMART madsneu2 2 41 IPR002100 GO:0003677|GO:0046983
Adu04g02037 66 MobiDBLite consensus disorder prediction 33 66 - -
Adu04g02037 66 Gene3D - 1 54 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g02037 Adu-Chr4 100126836 100134037 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g02037 2 32 MADS-box Gene Family AT1G26310 87.097 2.44e-12 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Adu04g02037 SRF-TF 3.9e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g02037 K09264 - psom:113281852 61.6178