Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g01847 ATGACTCGTCACTTTACATATTTGGGATACAACAGGACAAGAAAGGCAGATTTGAATGATCATGAAGCATTTCCCTTTGTGTTACTTGGGAACAAGGTTGATGTAGATGGTGGGAACAGTAGAAAGGTGACTGAGAAGAAAGCTAGGGAATGGTGTGCTTCTAGAGGGAACCTACCATACTTCTGTTTAATTGATACCTGTGTACTAATCTTTTTGTCACTGGCATATATTCAAGTAGAAGTAGTAAAGGATGTAATTATGGACCACCATACGAGTGGCAAGTGTACAAAATTCTTGGTGGCAGTCATGGTGTGCCTCAAGTACATTACAAGGGCAGGTAAGCTTCTGTGGAATTACTGCATTTTAGATGAAGGGCATATAATCAAGAATGCTAAGTCCAAAGTTACACTTGCTGTAAAGCAGTTAAAAGCCCAACACCACTTGATATTGAGTGGGACTCTAATACAGAATAACATCATAGACTTGTGGTCCCTTTTTGATTTTCTAATGCCTGGATTTCTTGGAACAGAGAGACAGGTAAAGTCTTATTTTCCTTTCCTCATACTAATTATTACTTCTGCTCTACTGATTTAG 594 0.3872 MTRHFTYLGYNRTRKADLNDHEAFPFVLLGNKVDVDGGNSRKVTEKKAREWCASRGNLPYFCLIDTCVLIFLSLAYIQVEVVKDVIMDHHTSGKCTKFLVAVMVCLKYITRAGKLLWNYCILDEGHIIKNAKSKVTLAVKQLKAQHHLILSGTLIQNNIIDLWSLFDFLMPGFLGTERQVKSYFPFLILIITSALLI 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g01847 197 Gene3D - 75 187 IPR038718 -
Adu04g01847 197 PANTHER B-TFIID TATA-BOX-BINDING PROTEIN-ASSOCIATED FACTOR 1 104 184 - -
Adu04g01847 197 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 111 184 IPR027417 -
Adu04g01847 197 Gene3D - 3 68 IPR027417 -
Adu04g01847 197 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 73 172 IPR014001 -
Adu04g01847 197 PANTHER SNF2/RAD54 HELICASE FAMILY 104 184 - -
Adu04g01847 197 Pfam SNF2-related domain 113 178 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g01847 Adu-Chr4 92549419 92551221 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g01847 117 169 RAD5 or RAD16-like Gene Family AT5G22750 50.943 4.51e-10 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Adu04g01847 SNF2_N 1e-18 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g01847 K15192 - adu:107469552 212.616