Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g01843 ATGGAAATGTCTTCGAGCCCTCGCACCGTTGAAGAGATCTTCAAGGACTACAGCGCTCGTAGAACCGCTGTTGTTCGTGCACTCACTCAAGATGTTGATGAATTTTACGGCCTCTGTGATCCAGACAAGGAGAACTTGTGCCTTTATGGACATCCAAATGAATCATGGGAAGTAACTCTGCCAGCAGAGGAGGTTCCACCAGAGCTTCCTGAGCCAGCGCTTGGAATCAATTTTGCTAGAGATGGCATGAACCGCAGGGACTGGCTTTCTTTGGTTGCGGTTCACAGTGACTCGTGGCTGCTTTCTGTGGCCTTCTATCTTGGAGCTCGTCTTAACCGCAATGAGAGGAAGCGTTTATTTAGCTTGATCAATGATCTTCCCACTGTTTTTGAGGTTGTGACTGACAGAAAACCAAGCAAGGACAAGCCCACTGTGGATAGTGGGAGCAAATCTCGGGGAAGCACCAAGAGATCAAGTGATGGGCAAGTTAAAAGCAACCCAAAGTTTGCAGATGAGGGTTACGAAGAGGATGAAGATGAGCACAGCGAAACCCTCTGTGGTAGCTGTGGTGGAAATTACAACGCAGATGAATTCTGGATTGGCTGTGATATTTGTGAGAGATGGTTCCATGGGAAATGTGTGAAGATTACCCCGGCAAAGGCTGAGAGCATAAAGCAATACAAATGCCCATCATGCAACATGAGGCGGGGCAGGCCCTAG 720 0.4833 MEMSSSPRTVEEIFKDYSARRTAVVRALTQDVDEFYGLCDPDKENLCLYGHPNESWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTDRKPSKDKPTVDSGSKSRGSTKRSSDGQVKSNPKFADEGYEEDEDEHSETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCNMRRGRP 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g01843 239 MobiDBLite consensus disorder prediction 148 165 - -
Adu04g01843 239 SMART PHD_3 185 233 IPR001965 -
Adu04g01843 239 MobiDBLite consensus disorder prediction 134 176 - -
Adu04g01843 239 ProSitePatterns Zinc finger PHD-type signature. 186 232 IPR019786 -
Adu04g01843 239 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Adu04g01843 239 PANTHER CPG BINDING PROTEIN 3 238 IPR045104 GO:0006355|GO:0042393
Adu04g01843 239 CDD PHD_AL_plant 185 235 IPR044104 -
Adu04g01843 239 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 3 238 - -
Adu04g01843 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 233 IPR013083 -
Adu04g01843 239 Pfam PHD-finger 186 233 IPR019787 -
Adu04g01843 239 ProSiteProfiles Zinc finger PHD-type profile. 183 235 IPR019787 -
Adu04g01843 239 SUPERFAMILY FYVE/PHD zinc finger 174 237 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g01843 Adu-Chr4 92235880 92240193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g01843 4 238 Alfin-like Transcription Factor Family AT5G05610 77.119 3.68e-121 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Adu04g01843 Alfin 6e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g01843 - - gmx:100793126 462.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu04g01843 04 92235880 92240193 Adu02g01959 02 81547881 81551892 PCT