Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g01840 ATGGCCGAACTTCATTCCACTTCAAATTCAACTCTAACTCCTCCTCCATCTACTTCCGCGGGTAACAATGAATCTTCTGGAGCTTCACCATCGACTTCCCGAGGCCGTCGCAACGATCAGAACGCCGCTGACCGATCTCAGGCTCGATTCCGGTCGCCTGAAATTGAACCGATCGTTGGCCATGCTGGCAGAGTCATTGGCTGGGGAATCGGGGACGAGTCGTCGTCTGTTAGGGAAGATGCATGGTCATGCTTTGCTGTTGTATTCACGTTTTGGTTTTTCGTGTCAGTGACTATAATACTTGGGGTTTATGGGTCCATGAATCTCTTGCTTGGTCCAGAAACATCGATTGTGTTCCAACCTAGCCCTCTGTTCGTGCAATATCTCAGGGTAGAAAACTTAGAAGAAAAGCCAGGTCCTGTCGTGTATGGTACTTACCAATATCCAGATCTTGATGTTATTACCACTTGGGAACAAACTCTGCATGCAACTATTCCCTCTGACACACATCAGGAATGGATTTATTATCTGAATACTGGTTCAGAAGTGAATATTTCATATCACTTGAGCCCTGTGAGCTCCTCCGTTCTCCTTATAATTGCAGATGGGGCTGAAAGCCTCGCTCAGTGGATTGAATACCCTACATACCGTAATTCAACTCTCTCATGGAACATGATCCATGGTATGACAAAGGTGGAACTAAACCTCACAGTTAGGGCCTACTTGCACAATACAAAGAATGCTTACTACAAATATGCCTTGGCAAGTAGAAGTTCGTGCAGTTTGAGCATTTTCTTTCCACAAGGAAACGCAGCTATCTTGACTACTCCTGGTCCACAAAAGAATGCATCAGATGATGAATGGTACGTCAAAGTGACCTATGGACCTAGATGGATCACATATATTGTAGGCATAGGTGGATTGACTTTGCTTATGTTTTGGGCATTCAACCTCTTGAACAATCTCCAGTTTGCCCGTGAAGAAAGAGCAGGAGTTATAAACAATGGGACGGCACCTGATAGAGGCCCTTTGCGCTCTCGAAAAGATGATGACCTTTCCAGCTGGGGTTCATCATATGATTCACTGTCACAAGATGACGAAGATCTTGACTCTCAGGCCGGAGGTTCCGCGGAGGGGAAGTCTCTAGGTGATGGAGAAATTAGTAACAATACTCGGCGTCTCTGTGCCATTTGCTTTGATGCTCCGAGGGATTGTTTCTTTCTTCCTTGTGGGCACTCTGCAGCTTGTTTTGAATGTGGAACTAGGATCGCCGAGGCTGCTGGTACTTGCCCTGTTTGTCGTAGGAACATGAAGAAAGTGAGAAAGATTTTTACTGTTTGA 1341 0.4571 MAELHSTSNSTLTPPPSTSAGNNESSGASPSTSRGRRNDQNAADRSQARFRSPEIEPIVGHAGRVIGWGIGDESSSVREDAWSCFAVVFTFWFFVSVTIILGVYGSMNLLLGPETSIVFQPSPLFVQYLRVENLEEKPGPVVYGTYQYPDLDVITTWEQTLHATIPSDTHQEWIYYLNTGSEVNISYHLSPVSSSVLLIIADGAESLAQWIEYPTYRNSTLSWNMIHGMTKVELNLTVRAYLHNTKNAYYKYALASRSSCSLSIFFPQGNAAILTTPGPQKNASDDEWYVKVTYGPRWITYIVGIGGLTLLMFWAFNLLNNLQFAREERAGVINNGTAPDRGPLRSRKDDDLSSWGSSYDSLSQDDEDLDSQAGGSAEGKSLGDGEISNNTRRLCAICFDAPRDCFFLPCGHSAACFECGTRIAEAAGTCPVCRRNMKKVRKIFTV 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g01840 446 MobiDBLite consensus disorder prediction 335 384 - -
Adu04g01840 446 SMART ring_2 395 433 IPR001841 -
Adu04g01840 446 MobiDBLite consensus disorder prediction 1 37 - -
Adu04g01840 446 ProSiteProfiles Zinc finger RING-type profile. 395 434 IPR001841 -
Adu04g01840 446 PANTHER E3 UBIQUITIN-PROTEIN LIGASE APD1-RELATED 2 228 - -
Adu04g01840 446 MobiDBLite consensus disorder prediction 1 50 - -
Adu04g01840 446 Pfam Domain of unknown function (DUF4792) 139 207 IPR032008 -
Adu04g01840 446 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 378 446 IPR013083 -
Adu04g01840 446 Pfam Domain of unknown function (DUF4793) 230 314 IPR032010 -
Adu04g01840 446 Pfam Zinc finger, C3HC4 type (RING finger) 392 440 - -
Adu04g01840 446 PANTHER E3 UBIQUITIN-PROTEIN LIGASE APD1-RELATED 231 446 - -
Adu04g01840 446 SUPERFAMILY RING/U-box 394 440 - -
Adu04g01840 446 PANTHER OS05G0521000 PROTEIN 231 446 IPR044586 GO:0004842
Adu04g01840 446 PANTHER OS05G0521000 PROTEIN 2 228 IPR044586 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g01840 Adu-Chr4 92119783 92124824 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g01840 368 443 C3H Transcription Factor Family AT3G06140 27.632 4.50e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g01840 - - ahf:112743648 835.099
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu04g01840 04 92119783 92124824 Adu04g01840 04 92119783 92124824 ECH