Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g01829 ATGGCGTCTCACCAACAAGAGCCATGGCTTCTAGAGAATGGAAATGTGAAGGTGTTGACTAAGGAAATGCGGCACGGCCATGGCCGGAGCCGTACTGCCCACAACATGTCGTCCTCTTCTCTTAGGAAGAAATCCGACCGGACCCTGGTGTCGAAGGTTCGGTGCGGATTGCTAAGGAATTTGTTGGTTAACATCCAAGAAGTTATTCTGGGGACAAAGTTGTCCATCTTGTTCCCAGCAATTCCCATTGCCATCATTGCCCAATGCTATGGCCTTGGAAGACCATGGATTTTTGCATTGAGCTTACTTGGGCTTACACCGCTTGCTGAACGTGTCAGCTTCCTCACAGAACAAGTTGCAATTTACACTGGTCCTACAGTTGGAGGGCTTCTAAATGCAACATGTGGAAATATTACTGAGCTGGTGATAGCAATATTTGCACTGAGTAGTAACAAAGTTGATTTGGTGAAGTATTCTCTACTGGGTTCTATCCTCTCAAACCTTCTGCTGGTTCTTGGAACCTCTCTCTTGTGTGGTGGCATTGCAAACCTTGCAAAGGAACAAAAATATGACAGAAGACAAGCAGATGTGAACTCTCTAATGCTTCTGCTGGCATTGTTGTGCCACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGGCCGCGGACTCATCGCTGTACTTGTCGAGGGCCGCCAGCATTACCATGTTGGTTGCATATTTTGCTTACCTTATCTTTCAGCTGTGGACACACAGGACATTGTTTGAAGCTGAAGATGAGGATGGAGATGGTGAGAATGGTTCAGATGATGAAGAAGCTGTTATTGGAGTGTGGAGTGGTGTTGCATGGCTGGCTGGGATGACTGTCTTCATTGCCTTGTTATCTGAATATGTGGTGGACACAATTGAGGAAGCATCAGAGTCATGGGGTCTCTCTGTAAGCTTTCTCAGCATAATTTTGCTACCAATTGTTGGCAATGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGATATCACGTTGGGTGTTGCATTAGGTTCTGCCACGCAAATTGGCATGTTTGCGGTTCCTCTATGTGTACTGGTTGCTTGGATAATGGGTGTTAAAATGGATCTAAACTTCAACCTCCTAGAAACCGGTTCTCTTGCTTTGGCAATAATAGCCACATCCTTTACTTTACAGGATGGTACATCTCACTACATGAAAGGGCTTATTCTTCTTTTGTGCTACGTTGTCATTGGTGCTTGCTTCTTTGTACAAAGAACACCCTTAAACCAAGTGAATGTTAACATCACATTCAAGTCAGCAAGTGATGCAGTTTTAAATGCTTAA 1362 0.4332 MASHQQEPWLLENGNVKVLTKEMRHGHGRSRTAHNMSSSSLRKKSDRTLVSKVRCGLLRNLLVNIQEVILGTKLSILFPAIPIAIIAQCYGLGRPWIFALSLLGLTPLAERVSFLTEQVAIYTGPTVGGLLNATCGNITELVIAIFALSSNKVDLVKYSLLGSILSNLLLVLGTSLLCGGIANLAKEQKYDRRQADVNSLMLLLALLCHXXXXXXXXXXXXXXXAAADSSLYLSRAASITMLVAYFAYLIFQLWTHRTLFEAEDEDGDGENGSDDEEAVIGVWSGVAWLAGMTVFIALLSEYVVDTIEEASESWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDITLGVALGSATQIGMFAVPLCVLVAWIMGVKMDLNFNLLETGSLALAIIATSFTLQDGTSHYMKGLILLLCYVVIGACFFVQRTPLNQVNVNITFKSASDAVLNA 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g01829 453 TIGRFAM caca2: calcium/proton exchanger 60 428 - -
Adu04g01829 453 Gene3D - 125 283 IPR044880 -
Adu04g01829 453 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 1 441 IPR004713 GO:0006812|GO:0008324|GO:0016021
Adu04g01829 453 Pfam Sodium/calcium exchanger protein 96 254 IPR004837 GO:0016021|GO:0055085
Adu04g01829 453 Pfam Sodium/calcium exchanger protein 286 423 IPR004837 GO:0016021|GO:0055085
Adu04g01829 453 PANTHER VACUOLAR CATION/PROTON EXCHANGER 3 1 441 - -
Adu04g01829 453 TIGRFAM cax: calcium/proton exchanger 79 428 IPR004798 GO:0006816|GO:0015369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g01829 Adu-Chr4 91605296 91610757 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g01829 1 437 Antiporters AT2G38170 65.315 0.0 556
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g01829 K07300 - gmx:100779440 650.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu04g01829 04 91605296 91610757 Adu04g01829 04 91605296 91610757 ECH
Adu04g01829 04 91605296 91610757 Adu02g01949 02 81372674 81377636 PCT