Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g01822 ATGGGTTCTGCAGTTGTCTCCAGGGAAAGCATGATGGGAAGCAAGAAGGAAGTGGCGGCGTGCAAGAAAGCAATGAGAGAGACCAACGAGCCGGCGTTCAAGAAGAGTGCTTATGGCGACGGTGACGTTGTCTTCTCTACCACTGGACAGGAAACACATCTGACGGAGTGCCAACATCAGAAGCTTGAGACTGAAACTGATCACCTTGCTTCGTTGGTGATGGAGGGGTTCAGTTTTTCTAGGGACGATGGGTCTGATACTGATCCGGAAGTGAGTTGTTCAGAGCCTAAAAAAAATAACTTAGTCtgcagggtcggatctgttgatgCTTGTGTGTTCGGTTCTGCTTCGCGTGTTGAAGTTCATCTATTTGGTCCTTGTGAGACCATCTTAGCTGTTGATGACCGAAAGGTAGGAAAGCGAAAAGCCGCTGCCAAGCCTGACAAGAGTAGCGCACGGTCAAAGAAGGCAAAGAAAGATCCCAACAAACCCAAAAGGCCGCCAAGTGCTTTCTTTGTGTTCCTTGAGGAGTTCAGAAAGACGTTCAAGGCAGAAAATCCTCATGTGAAGGCTGTATCAGCTGTTGGTAAAGCTGGAGGAGAAAAATGGAAGTCCATGAGTCCAGCTGAAAAAGCTACTTATGAAGCCAAGGCTCAAAAAAGGAAGGCTGATTATGAAAAACAAATGAATGCTTATAATAAAAAGCAGGCAAGTTCAGCAGATGATGGAGATGAGGAATCAGACAAGTCCAAATCTGAAGTGCATGATGACGAGGAAGAAGGCAGTGCAGAGGAGGACCATCAAGAGGAGGATGAGGATGACGATGACGACGAGGGGGAAGATGAGAATGACGATGACGACGATTGA 867 0.4579 MGSAVVSRESMMGSKKEVAACKKAMRETNEPAFKKSAYGDGDVVFSTTGQETHLTECQHQKLETETDHLASLVMEGFSFSRDDGSDTDPEVSCSEPKKNNLVCRVGSVDACVFGSASRVEVHLFGPCETILAVDDRKVGKRKAAAKPDKSSARSKKAKKDPNKPKRPPSAFFVFLEEFRKTFKAENPHVKAVSAVGKAGGEKWKSMSPAEKATYEAKAQKRKADYEKQMNAYNKKQASSADDGDEESDKSKSEVHDDEEEGSAEEDHQEEDEDDDDDEGEDENDDDDD 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g01822 288 MobiDBLite consensus disorder prediction 193 288 - -
Adu04g01822 288 Gene3D High mobility group box domain 148 248 IPR036910 -
Adu04g01822 288 SMART hmgende2 163 234 IPR009071 -
Adu04g01822 288 Pfam HMG (high mobility group) box 164 233 IPR009071 -
Adu04g01822 288 MobiDBLite consensus disorder prediction 238 257 - -
Adu04g01822 288 SUPERFAMILY HMG-box 150 234 IPR036910 -
Adu04g01822 288 Coils Coil 215 235 - -
Adu04g01822 288 MobiDBLite consensus disorder prediction 138 168 - -
Adu04g01822 288 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 128 275 IPR031061 -
Adu04g01822 288 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 164 233 IPR009071 -
Adu04g01822 288 MobiDBLite consensus disorder prediction 258 288 - -
Adu04g01822 288 MobiDBLite consensus disorder prediction 214 229 - -
Adu04g01822 288 PANTHER HIGH MOBILITY GROUP B PROTEIN 1 128 275 - -
Adu04g01822 288 MobiDBLite consensus disorder prediction 138 157 - -
Adu04g01822 288 CDD HMGB-UBF_HMG-box 164 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g01822 Adu-Chr4 91199475 91206857 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Adu04g01822 HMG_box 4.9e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g01822 K25507 - sind:105174553 158.688