Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g01798 ATGACTTCGCCATTTACTTTCTTTTGGGAAGCGTCATCTCCCCCATTGTTACAAGAAGAGGAGGCAGATTTGCAACATTATCTAACCCTCATGAGAGATCAAATAACAGATTACTTCATTCTCAAGGTACAAGTTACGCATCAAACTTGCTGGACTCATCATCAACAACCACAATCACATCCACCAGTGTTAGGAGCCATTTATTCGTTTGAATCCTCAATTCTAATCCAAGCGCAAGAATTCCTTCAAAACGGTTCATCACACATGCAAATGCACTTCCCTGATGCTATTATACCAATCGTCTTGATTGATAACATGATGCCAGATATCATATCCTACGCAAAAGCCATAATTCAAACTCGTCGTTCCGGATTCCTCTATGAAAGACCTGATTTTCGTTTGTTCAGTTTGTATCTGGACATTATTATCCAGAATCCTATATTGTACGTTGATGACTTGAATATCCAGAATTTGTCATTGGAAGTTGATGACTACGACAACATGATCACCGACTTAATCGTTGAAGAGTCTATGGGAGATACTAATAATATTAAGATGGTTCCTGCGTCGAAGAATGCCATTGAGTCTCTTGAGAAAGTGAAGCTTGAGAATAATAACCACCTAGTAGAGAGGTGCACTATTTGTCTAACTGAATTTGATTATGGTGATGATGCAGAACAAGTTTCATCAATGCCTTGTAAGCATGTATATCATCAAGAATGCCTCGCGCAATGGCTCAAGACTAGTCATTTATGTCCTTTATGTCGCGAGAAGGGAGATAGGGGATGGAGAGGTGTGGCACAAGGTGCTTTGCCAAAGGATGAGGGGCAGATGCTTCGTGTTTTGGCCTTCTGGTTCTGGactcgagctccgatcggcaacaaccgtgccttgctgccgccggtggcggataccttgggaaacTCCGAGTCTCTGATCAGTGATCACCAACAACCTTTCTTCGAATGGTGCCGCCAAAACTGCCCTTCTCTCTCAAACACCGCTTCCCCCGTTCACCACCGCCGCCACGAACCTTCTCAATCATTCCACTTCCGCCGCCCACTCCTCCTAGTCTCTCTCTCCTCGCCGACCAATGCACCACGATACACCACCTCAAACAAGTCCACGCCCAGATGA 1137 0.4125 MTSPFTFFWEASSPPLLQEEEADLQHYLTLMRDQITDYFILKVQVTHQTCWTHHQQPQSHPPVLGAIYSFESSILIQAQEFLQNGSSHMQMHFPDAIIPIVLIDNMMPDIISYAKAIIQTRRSGFLYERPDFRLFSLYLDIIIQNPILYVDDLNIQNLSLEVDDYDNMITDLIVEESMGDTNNIKMVPASKNAIESLEKVKLENNNHLVERCTICLTEFDYGDDAEQVSSMPCKHVYHQECLAQWLKTSHLCPLCREKGDRGWRGVAQGALPKDEGQMLRVLAFWFWTRAPIGNNRALLPPVADTLGNSESLISDHQQPFFEWCRQNCPSLSNTASPVHHRRHEPSQSFHFRRPLLLVSLSSPTNAPRYTTSNKSTPR 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g01798 378 PANTHER F6A14.12 PROTEIN-RELATED 93 256 - -
Adu04g01798 378 SMART ringv_2 211 256 IPR011016 GO:0008270
Adu04g01798 378 Pfam Ring finger domain 211 256 IPR001841 -
Adu04g01798 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 260 IPR013083 -
Adu04g01798 378 ProSiteProfiles Zinc finger RING-type profile. 212 256 IPR001841 -
Adu04g01798 378 SUPERFAMILY RING/U-box 193 258 - -
Adu04g01798 378 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 93 256 - -
Adu04g01798 378 SMART ring_2 212 255 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g01798 Adu-Chr4 88955677 88957612 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g01798 174 258 C3H Transcription Factor Family AT1G18760 42.353 7.40e-17 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g01798 - - adu:110276959 501.13