Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Adu04g01602 | ATGTCGTTCCGTTCACACAATCGACTTGGCTCAGAGACCCTCCCCATGAGCGCCCATAAACTGCTGAGCTCCTGCCCCATTCTACAAAAGCCAGGCTATAAATCCTCTGGAGCTATCCATGGATGCTCTAAAGGAAATCCATTCACGATTTATGAAGACTTTCCACCACATCCACAGGAACAGATTTATGATCTTGGAGGTGGAATCAACCAAATTCCAGGGGAATGTACTATTTCAGGAGATGTCATGTTAACCCTATTTTACAATGTGAAGGATGTAGTAACAAAGCTGCAAGAATATGTGGACAACATTAATCTCAACATATATAAGCTAGAAACACGGGGTCTTGTTTCAAAATATGTCTTTCCTGATGATGACTTAAGGGGAAGGTGCACAATGGTAAGTGGTGGTGGCCGTATTAGGCCTCAAAAGGATCCACTTAATAACCCCATTGATATGGTAGTTGGTACCCCTGGAAGGATTCTTCAACATATTGAGGAGGGCAACCTGGTGTATGGCGACATCAAATACTTGGTCTTGAATGAGGCAGATATAATGTTTGATCGTGGCTTTGGTCCTGATATATGCAAATTTCTGGCCCCATTGAAACATCGTGCATCAAAGTCTGATGGCCTAGGTTTTCTGACCATCTTGGTAACCGCAACAATGACAATGGCTGTGCAAAAGCTAATTGATGAGGAGTTTCAGGGCATTGTTCTGAGAACAAGCTGGAAGCATTACTTCAGTTACTTGTGCCAAGCCGAGCAAAAGGCAACAAGGGGTCTGGACTTGGATGTAGATCATGTTGTTATGTTTGACTTCCCCTTGAACTCTATCGATTACCTTCATCGGACTGGTAGAACTGCTCGTATGGGTGCAAAAGGGAAAGTAACCAGTTTGGTTACAAAGAAGGACTTGATCTTGGCGACTAGAATAGAGGAGGCAATGAGGAAGAATGAGAGTTTGGAGGCTATCATGAAAGAAGGAGTACGAAGGGATATCGCCAGGACCCAAGTTAATGGGCAGAGTGGGAAGGACAGAAAATTAGTTAAAGTTTCTAAAGTTAAGAACAATCCTGGTGGACGTGCCAGTTTAGGGAATAAATGA | 1107 | 0.4336 | MSFRSHNRLGSETLPMSAHKLLSSCPILQKPGYKSSGAIHGCSKGNPFTIYEDFPPHPQEQIYDLGGGINQIPGECTISGDVMLTLFYNVKDVVTKLQEYVDNINLNIYKLETRGLVSKYVFPDDDLRGRCTMVSGGGRIRPQKDPLNNPIDMVVGTPGRILQHIEEGNLVYGDIKYLVLNEADIMFDRGFGPDICKFLAPLKHRASKSDGLGFLTILVTATMTMAVQKLIDEEFQGIVLRTSWKHYFSYLCQAEQKATRGLDLDVDHVVMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVTKKDLILATRIEEAMRKNESLEAIMKEGVRRDIARTQVNGQSGKDRKLVKVSKVKNNPGGRASLGNK | 368 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Adu04g01602 | 368 | Gene3D | - | 86 | 239 | IPR027417 | - | |
Adu04g01602 | 368 | Pfam | Helicase conserved C-terminal domain | 254 | 292 | IPR001650 | - | |
Adu04g01602 | 368 | Pfam | DEAD/DEAH box helicase | 130 | 230 | IPR011545 | GO:0003676|GO:0005524 | |
Adu04g01602 | 368 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 128 | 304 | IPR027417 | - | |
Adu04g01602 | 368 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 | 255 | 352 | - | - | |
Adu04g01602 | 368 | MobiDBLite | consensus disorder prediction | 339 | 368 | - | - | |
Adu04g01602 | 368 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 93 | 241 | IPR014001 | - | |
Adu04g01602 | 368 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 | 255 | 352 | - | - | |
Adu04g01602 | 368 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 | 128 | 243 | - | - | |
Adu04g01602 | 368 | SMART | helicmild6 | 193 | 292 | IPR001650 | - | |
Adu04g01602 | 368 | Gene3D | - | 254 | 358 | IPR027417 | - | |
Adu04g01602 | 368 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 | 128 | 243 | - | - | |
Adu04g01602 | 368 | Coils | Coil | 312 | 332 | - | - | |
Adu04g01602 | 368 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 160 | 334 | IPR001650 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Adu04g01602 | Adu-Chr4 | 71565268 | 71570942 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Adu04g01602 | 136 | 201 | Eukaryotic Initiation Factors Gene Family | AT3G13920 | 39.130 | 8.20e-07 | 48.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Adu04g01602 | - | - | pvu:PHAVU_004G0886001 | 201.83 |