Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g01542 ATGGAGTGTGAAGTGGGAGTTCAAGGTTTGGATCTGCATGCAAAGGTGGCAAAAACGGAAACAGTAGACCCTATTCTTGGTCTTGGAGCCATGAATCATCATCACCACAACAATCATCATCATCATGATGCAGAGATTTATGCAGATGCTGATGATGCAGATAAAGATTTGTGGCTCAACACAACAACAGAACAAGAAGATTTACTTGTTGGGGATGTGAAAACAGATGCATCTATGTTCTACGACCAATTCCCTCCTCTCCCTGATTTCCCATGCATGTCTTCATCATCGTCTTCGTCTTCAACTCCAACACTTCCATTGAAGAATCTAGCATGCTCAACCACCTCGACCACAACGGCTACCGCAGCAACCTCTTCGTCTTCGTCGTCTGCTTCTTCTTGGGCAGTTCTGAAGCCAGAAGCGGAGGATAATAACAACGGAGAGTGGAACTGCAGTAATAAACAGCAACTTTACATGCAACATCATGATCCACTGGACGCAACGGGAGCGTTGTCCTCAACAGCTTCCATGGAGATTTCACAGCCAAAGTTTCCGGATCAAGATGGATTTGACGGTGTTGTTGGTGAGGTTGATTGCATGGATGATGTGATGGACACTTTTGGGTACATGGAGCTTCTAGAAGCCAACGAGTTCTTTGACCCTTCGTCTATCTTCCAAGGCGAAGAGAATCCCTTAGCGGAATTCACACAAGAGGATCAGGTTTTGCCACAGCAAGAAGAACAACAGAAGCAAGAAAAACCTGCAGTAGTTCATAATCAAAATGATCTTGTTGTTCTTAGACCACAGCAAGAAGCAGTAGTGGAAGGTGTTAGTAACAATAATTATGAACAGCTTCTTGGGTTGTGCGAAGCCAGTAACAATAACGATGTAGAGATCCAAGCAGATGCTGGTGGTGGTGGTGCAATTGCGGATGATGAAATGAGTATGGTGTTCCTGGAATGGCTGAAGTCGAACAAGGATAGCGTATCCGCGAGCGATTTGAGGAGCGTGAAGCTTAAGAAATCCACAATAGAGAGTGCTGCTAAGCGATTGGGCGGTGGAAAAGAAGCTATGAAGCAATTGTTGAAGCTGATTCTTGAATGGGTTCAAACCAGCCACCTTCAGAGTAAAAGGCGCAAGGAAAATAATAACGATAACGCAGTGGCAAACCCTTTCACGGAACAGTTTCAAAATCCAATTCATCAAAACCAGAACAACGCAAATGCTTCGAGTTCTTTTGTCATTGAACCAAACACATGTTTCACCCAGCAGCAACCATGGATGGATCAAGCACCTCTAATGGCAGCCGCTCCTCCGCCTCAGTTTCAGCCTCAGCCGCAATTTCAACAACCCATGGTTGGGTATGTTGGCGACCCTTACACAAACGCTGCTTCTGCAAACACCATGAATGGCAGCAATAATTTTCAGGCTGGTAATGAATACCATATGCTGGAATCAGCGAACTCATGGCCTCCTTCTCAATACACTGTTACTGCTTACTATACCCAGCCATTTGGGGACCATTGTTTTCAACCTCCGGCGGCGGGTGGCTTCGGTAACCAGTACCCTTATCAGTTTTTCCATGGACATGGTGATGGATTGATGAGATTAGGACCCTCAGCTACAAAAGAAGCGAGGAAGAAGCGGATGGCGAGGCAGAGAAGGCTTTCCTCTCATTCTAGGCATCATATTAATCTACAGAGTCAGGGTTCTGATCCAAATGCAAGATTGGGTGTTGGTGGTGAAAATTGCACTGGTGTTGTATCTGCAGCTCCGGCTAATTGGGTGTATTGGCCAACTATGGCTGGTGCTGTTGCTTCCGTTGCGCCCGTGGCTCCCGCGGAACCGTCGGCTGTGGTGGATAAACCTGCCATGCAGACACAGAATTATCATCATCAGGGTCGGCTCTCATCTGATAGGAGACAGGGTTGGAAGTCGGAGAAGAACTTACGATTCCTTTTACAAAAGGTGTTGAAGCAAAGCGATGTTGGAAGTCTGGGAAGAATTGTTCTACCAAAAAAAGAGGCAGAAACACATCTACCAGAACTAGAGGCAAGGGATGGAATCACCATAACAATGGAAGATATTGGCACCTCTCGTGTTTGGAATATGCGCTATAGATACTGGCCAAACAATAAAAGCAGGATGTATTTGCTAGAGAACACAGGTGACTTTGTTAAAGCCAATGGACTCCAAGAGGGAGATTTCATAGTGATATATTCAGATATGATAAGAGGAGTTAAAGTAAGGCAACAAGAAGGGGCGAAAGCAGAGGGCAAGAAAACAGGAAAATCTCATAAAAAACAGCATGGGAACAATGCGGTGCCTACAGCTGGTGCACCTTATACGAATGCCACGTCATCATCCAGTCAGCAAGAAAATGAAAAAGAGAGTATATAA 2400 0.4537 MECEVGVQGLDLHAKVAKTETVDPILGLGAMNHHHHNNHHHHDAEIYADADDADKDLWLNTTTEQEDLLVGDVKTDASMFYDQFPPLPDFPCMSSSSSSSSTPTLPLKNLACSTTSTTTATAATSSSSSSASSWAVLKPEAEDNNNGEWNCSNKQQLYMQHHDPLDATGALSSTASMEISQPKFPDQDGFDGVVGEVDCMDDVMDTFGYMELLEANEFFDPSSIFQGEENPLAEFTQEDQVLPQQEEQQKQEKPAVVHNQNDLVVLRPQQEAVVEGVSNNNYEQLLGLCEASNNNDVEIQADAGGGGAIADDEMSMVFLEWLKSNKDSVSASDLRSVKLKKSTIESAAKRLGGGKEAMKQLLKLILEWVQTSHLQSKRRKENNNDNAVANPFTEQFQNPIHQNQNNANASSSFVIEPNTCFTQQQPWMDQAPLMAAAPPPQFQPQPQFQQPMVGYVGDPYTNAASANTMNGSNNFQAGNEYHMLESANSWPPSQYTVTAYYTQPFGDHCFQPPAAGGFGNQYPYQFFHGHGDGLMRLGPSATKEARKKRMARQRRLSSHSRHHINLQSQGSDPNARLGVGGENCTGVVSAAPANWVYWPTMAGAVASVAPVAPAEPSAVVDKPAMQTQNYHHQGRLSSDRRQGWKSEKNLRFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGITITMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVKANGLQEGDFIVIYSDMIRGVKVRQQEGAKAEGKKTGKSHKKQHGNNAVPTAGAPYTNATSSSSQQENEKESI 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g01542 799 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 57 797 - -
Adu04g01542 799 MobiDBLite consensus disorder prediction 553 575 - -
Adu04g01542 799 SMART B3_2 654 753 IPR003340 GO:0003677
Adu04g01542 799 MobiDBLite consensus disorder prediction 751 799 - -
Adu04g01542 799 ProSiteProfiles B3 DNA-binding domain profile. 654 753 IPR003340 GO:0003677
Adu04g01542 799 Gene3D - 644 768 IPR015300 -
Adu04g01542 799 SUPERFAMILY DNA-binding pseudobarrel domain 653 742 IPR015300 -
Adu04g01542 799 MobiDBLite consensus disorder prediction 769 799 - -
Adu04g01542 799 Pfam B3 DNA binding domain 655 740 IPR003340 GO:0003677
Adu04g01542 799 MobiDBLite consensus disorder prediction 120 135 - -
Adu04g01542 799 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 57 797 IPR044800 GO:0003700
Adu04g01542 799 CDD BfiI_C_EcoRII_N_B3 652 750 - -
Adu04g01542 799 MobiDBLite consensus disorder prediction 120 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g01542 Adu-Chr4 64817400 64822067 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g01542 43 789 B3 DNA Binding Superfamily AT3G24650 42.005 1.28e-146 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Adu04g01542 B3 5.8e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g01542 - - ahf:112742109 1287.71