Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g01450 ATGCCCATAGATGAGATCAGAATGGAAGAAGGTAGTGGCGCCGTGATCAAGAGTTCGTCGCAAAGTATTAAAGAAAATGGGTTTTGCGGTTCTCCTGAGGTAGTTCTCATCATACAGAAGGTAATTGCGGAGACAATTGGGACATACTTCTTAGTATTCTTAGGATGTTGTGTGGTTGTTTTGAATAATGTAGAAGGGAGTGAAGGTGCAATAACATTTCCTGGGATTTGTGTGACATGGGGTGTTGCAGTTATGATATTGATCTATGCTCTTGGTCATATTTCTGGTGCACATTTTAATCCCGCTGTCACCATAAGCTTCGCTCTCTATCGCCGATTCCCTCCCAGACAGGTGCCTCTATATTTGATAGCGCAAGTGCTAGGGTCAGTGCTTGCGAGTGGGACATTGTACCTTCTATTTGATGTGACCGATGCTTCTTTCTTCGGAACGGTACCAAAAGGGTCTCATATTCAGTCTCTTGTATTCGAGATCCTCACTTCCTTTCTTTTGATGTTTGTTGTCTCTGCCGTCACCTCTGATGATAGAGCAGTTGGAGAATTGGCGGGAATTGCTGTTGGTATGACAGTACTAGTAGATGTTTTTGTTGCCGGGCCAGTATCAGGAGCATCCATGAACCCAGCAAGAAGCTTAGGACCAGCATTGGTGATGCATGTTTATAAGGGATTCTGGATTTATATAGTTGGACCATTTTCAGGTGCCATTCTCGGTGCCTCTGCCTACAACTTAATTAGATTCACCGATAAACCACTCAAAGAAATTGGCCATAACACTAGTTTTCTCAAAAGCATGTCCAAAGCAACAAGCTTCCGGATATGA 837 0.4349 MPIDEIRMEEGSGAVIKSSSQSIKENGFCGSPEVVLIIQKVIAETIGTYFLVFLGCCVVVLNNVEGSEGAITFPGICVTWGVAVMILIYALGHISGAHFNPAVTISFALYRRFPPRQVPLYLIAQVLGSVLASGTLYLLFDVTDASFFGTVPKGSHIQSLVFEILTSFLLMFVVSAVTSDDRAVGELAGIAVGMTVLVDVFVAGPVSGASMNPARSLGPALVMHVYKGFWIYIVGPFSGAILGASAYNLIRFTDKPLKEIGHNTSFLKSMSKATSFRI 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g01450 278 TIGRFAM MIP: MIP family channel proteins 43 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Adu04g01450 278 CDD MIP 39 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Adu04g01450 278 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Adu04g01450 278 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267|GO:0016020|GO:0055085
Adu04g01450 278 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Adu04g01450 278 PRINTS Major intrinsic protein family signature 162 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
Adu04g01450 278 PRINTS Major intrinsic protein family signature 193 215 IPR000425 GO:0015267|GO:0016020|GO:0055085
Adu04g01450 278 PRINTS Major intrinsic protein family signature 230 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Adu04g01450 278 ProSitePatterns MIP family signature. 98 106 IPR022357 -
Adu04g01450 278 Pfam Major intrinsic protein 37 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Adu04g01450 278 PANTHER AQUAPORIN NIP4-1 8 275 - -
Adu04g01450 278 PANTHER AQUAPORIN NIP2-1 8 275 IPR034294 -
Adu04g01450 278 Gene3D Glycerol uptake facilitator protein. 5 264 IPR023271 -
Adu04g01450 278 SUPERFAMILY Aquaporin-like 37 259 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g01450 Adu-Chr4 48939494 48943331 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g01450 4 273 Major Intrinsic Protein MIP AT5G37810 61.957 1.61e-115 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g01450 K09874 - gmx:100819179 366.311