Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g01400 ATGATCCCTGAAAGAAGTTACTACAGATGTACAAATGTGAAGTGTAATGTTCGAAAGCACGTGGAGAGAGCAATAGATGATCCAAGAGCATTTGTCACTACATATGAGGGAAAGCACAATCACGAGATGCCAATCAAGAACATCAACCCAAATGTCCCCTCTGAGAGAGATTCACAAGCTTCTCTTAGTAAAGACAAACCATGA 204 0.4069 MIPERSYYRCTNVKCNVRKHVERAIDDPRAFVTTYEGKHNHEMPIKNINPNVPSERDSQASLSKDKP 67
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g01400 67 Pfam WRKY DNA -binding domain 4 42 IPR003657 GO:0003700|GO:0006355|GO:0043565
Adu04g01400 67 Gene3D WRKY domain 3 45 IPR036576 GO:0003700|GO:0006355|GO:0043565
Adu04g01400 67 MobiDBLite consensus disorder prediction 41 67 - -
Adu04g01400 67 SMART WRKY_cls 5 43 IPR003657 GO:0003700|GO:0006355|GO:0043565
Adu04g01400 67 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 5 53 IPR044810 GO:0003700
Adu04g01400 67 ProSiteProfiles WRKY domain profile. 5 44 IPR003657 GO:0003700|GO:0006355|GO:0043565
Adu04g01400 67 PANTHER OS12G0507300 PROTEIN 5 53 - -
Adu04g01400 67 SUPERFAMILY WRKY DNA-binding domain 4 44 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g01400 Adu-Chr4 38078498 38078862 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g01400 5 45 WRKY Transcription Factor Family AT2G37260 73.171 4.40e-18 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Adu04g01400 WRKY 1e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g01400 - - gmx:100794069 114.775