Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g01356 ATGGATTCCATGCTCCTACAAAATTGTAGGTTTCATCTCTGCGTCCGCCGCCGCTCCCTGCTTCTGCCGCTGCCGCGCAGGACTCTGCCTAAACGCTTGGAGGAAGTAGAGGAAAGTGTAAAAGTACTAAAAGATGCATCTAAGACGAGAAAAGTAGCAGCAGAGAAGGTTCTCTCTGCACTTGCTGTCATTGAGAAAGCAAAAATTGATCCTTCTGGCTTTCTTGAAACCCTGGTTGGCAATGAATCCCCTGGGAGGACATGGATGCTAATTTTCACCGCTGAGTTCTTAAACAAATCACAGCTTCCATATCTTGTGACTTCACCACCATCCTATGTTACAAAGAAGGTTAAGACTGCTCTGATAGATATGTATGCAAAATGTGGTTCTGTGAGAGTCGCTCGTGCCTTGTTCGAGATGCTTAGGGAGGAAAGAGTTGTGTCTTGGAATGCAATTATCACTGGTTATGCAATGCATGGTCTTGCCAAGGAAGCCTTGGAACTCTTTGAGGTAATGAGGAAAGAGGCTTGGCCGGATCTTATAACCTTTGTTGGTGTTCTAGCAGCTTGCAGCCGTGGGCTTCTGCTCAATGAAGGGCAAGCATTTTATGATATGATGATGAGGGATTATGGTATCAATCCAACTGTTCAACACTACACATGCATGGAAGTTATGGGTCAAGAATTTTCTCATGAAGGGGTTAATAGCGAGCATACATCATATGATCAGTATGAGCAGGAGGAAGAAAAATATGAGGAAGTTGACGTGGATTATATGGATGAGGACGACACAAGTGTAGAACCAATGATTGAATTTTGGAACATCAGGGATGAAGATGTATGTCATTTTCACTTTTCTGATGTCGACATTACATTTGAGTTCTACAATAGATATGCAAGGACAAGAGGCTTTAGTGCTCGGAAGAACAGGAGTAGGAAGAGTCGTGCGGGCTCACTTAAGTTGAAGAATTTTGTATGTCATCGTGAAGGATTTAGACTGCAAAATAATTACGGCATTGGAAACCTTAAGAGAAAACCTACACCCGAGACAAGGTGTGGCTGCAGTGCAATGATGGAGATTCGTGTAGATGCACCTAGTGGTCGTTGGTTTATTTCCTATTTTTCTGATGAACATAATCATCCGCTTCTGGATCCTCGGTTGATTGGATTGCTCCCTGGGCATAGATTCatgtccgaggctgatattggccacatggttaacatgaaaaagggtgggattagtgttgggcagatatatcgggcattagcaaatcaggcaggtggctacgagtatctctctttcacgcaaagggacatgtacaataaaatagcaaagcagagGCGCCAATTACCCGGTGATGCATATGCAGCTTTGAAGTATCTAGAAGATCAAGCAACAAATGACCCTTCTCTCTATTTGCAAGTAACAAATGACCCTTCTCTCTATTTTAATCATCACATGGATGCCGATGACCGAATGCCAAATGAGATGTGGCGTGTATTCTATTGTGACATTGAGATGGAATTCAATTGTTCATGTATGAGAATGGAATCATTTGGCATACCTTGTGAACACATAATTTGCGTCTTGGTGCATGAAGATATAGAGGAGTTGCCAAGGTCATTAGTCTTGCCTCGGTGGACCAAGACTGCCAAAGTTAGTTTCCAAAATGCTCGAGGGCTTCATTGGGATTCTTTGATGCTAAGTCAATACGGTTGTTTGATGGATTGGTTTAGACAACTAGCCAACTTTGCTTGTCGAGATAACGAGAGATTTATCTTTACACGGGAAATGGCTATGAATTTGTTGAAACAATTTAAGGAGGAAGATGCTGCACAAAAAGAGTTGGTCAATGATGCAGATAGTGTAAGAGATGGTGTGCAAGTGGATAATTCTGGAGCTGGGCTTGCAACCAATGATCTCGGACATAGCATGCCAAGGGACCCAAGAAAATGTAGGACAAAAGGGGGGCTTCACAGTCCAATAAAAGAAAACATCGATGTGGACAGTGTGGCATGGAGGGCCACAATCGAACAACTTGTCGTGTTCGTCGTGGCATCTCACAGTCAGAAGGCCGGGGAAATGACACATTTGATAATGACTCGGATGATCACATGA 2118 0.4008 MDSMLLQNCRFHLCVRRRSLLLPLPRRTLPKRLEEVEESVKVLKDASKTRKVAAEKVLSALAVIEKAKIDPSGFLETLVGNESPGRTWMLIFTAEFLNKSQLPYLVTSPPSYVTKKVKTALIDMYAKCGSVRVARALFEMLREERVVSWNAIITGYAMHGLAKEALELFEVMRKEAWPDLITFVGVLAACSRGLLLNEGQAFYDMMMRDYGINPTVQHYTCMEVMGQEFSHEGVNSEHTSYDQYEQEEEKYEEVDVDYMDEDDTSVEPMIEFWNIRDEDVCHFHFSDVDITFEFYNRYARTRGFSARKNRSRKSRAGSLKLKNFVCHREGFRLQNNYGIGNLKRKPTPETRCGCSAMMEIRVDAPSGRWFISYFSDEHNHPLLDPRLIGLLPGHRFMSEADIGHMVNMKKGGISVGQIYRALANQAGGYEYLSFTQRDMYNKIAKQRRQLPGDAYAALKYLEDQATNDPSLYLQVTNDPSLYFNHHMDADDRMPNEMWRVFYCDIEMEFNCSCMRMESFGIPCEHIICVLVHEDIEELPRSLVLPRWTKTAKVSFQNARGLHWDSLMLSQYGCLMDWFRQLANFACRDNERFIFTREMAMNLLKQFKEEDAAQKELVNDADSVRDGVQVDNSGAGLATNDLGHSMPRDPRKCRTKGGLHSPIKENIDVDSVAWRATIEQLVVFVVASHSQKAGEMTHLIMTRMIT 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g01356 705 Gene3D Tetratricopeptide repeat domain 112 272 IPR011990 GO:0005515
Adu04g01356 705 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 145 179 IPR002885 -
Adu04g01356 705 Pfam PPR repeat 119 145 IPR002885 -
Adu04g01356 705 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 114 226 - -
Adu04g01356 705 SMART 26again6 509 536 IPR006564 GO:0008270
Adu04g01356 705 ProSiteProfiles Zinc finger SWIM-type profile. 501 534 IPR007527 GO:0008270
Adu04g01356 705 Pfam PPR repeat family 146 191 IPR002885 -
Adu04g01356 705 TIGRFAM PPR: pentatricopeptide repeat domain 147 175 IPR002885 -
Adu04g01356 705 Pfam FAR1 DNA-binding domain 293 383 IPR004330 -
Adu04g01356 705 PANTHER - 114 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g01356 Adu-Chr4 35211307 35216168 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g01356 117 222 Glycoside Hydrolase AT3G49170 42.056 5.86e-21 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Adu04g01356 FAR1 5.2e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g01356 - - ahf:112723376 473.396