Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g01291 ATGGAGGGAACCTTGCTACCCCTATCCTCTCCAACCCCTACCAAACCCAACAATAACTTCATTCTCTTCCAACGCTTCACTTTCCCTTCTTCACTTAATCACTTCCAAAAAACCCTCTCCACTCCCAAACGCACCGTCTTGACAGCTTCCTCTCGAAACTCACACCGTAGCTCTGCACTCGCTCTCCACGAAACCGCATCCGTTTCGGAGAAAACCGACGCCTCTTCCTTTGCCGCTTCCGCTTTGCCCAAAATCGACAAGACCGGCAGGTTTTGCAGCCCCAGAGCCGCCAGAGAACTTGCTCTGTCTATAATTTATGCTTCTTGCTTGGAAGGTTTGGACCCGGTTCGGTTGTTCGAGAAACGGATGAATGAGCGGCGAGAACCCGGTTATGACTTTGACAAGGAGAAGTTGTTGAAGTATAATCATATGAGTTTTGGAGGGCCACCTGTTACTGTTGAATCTGTTGAAGAAGAGAATGAACTGCTAAGTGACATTGAGAAGGAGTCTGCTGTTGAAGCTGAAGTCCTTGCAGCTCCTCCAAAGCTAGTATACAACAAACTGATATTGAGGTTCACTAGGAAATTATTAGTTGCAGCGAGGGATAGATGGGATGCTAATGTTGATAACGAGCCTGCAGGCAGGATTTTAGAGCTTTCTATTCTGCATTTGGCAATGTCTGAAATGACGGTGCTCGATACAAGACACCAAATTGTCATCAATGAGGCTGTGGATCTTGCTAAACGGTTTTGTGATGGAGCAGCCCCTCGTATCATAAACGGTTGCCTCCCGCACCACCAGCCTGCACTCGTCGGCGTCCAGTCGACGGTGATAGAGGAGTACGACCCCGCCAGGCCCAACGACTACGAGGAGTATCGCCGCGAGCGGAAGCGAAAGGCGAGGGAGGCGGAGATGATGCGTGAGCTGGAGCGGCGGCGCCAGGAGGAGGAGGAGAGAGAGAGGAGAGAGAGGGAGGAGAGAGAAAGAGAGAGGGAGCGGGAGCGGGATTACGGCGATTCCAGGTTGAATATTTCCGGCGAGGAAGCGTGGAGGAGGCGTGCTGCCATGAGTAGTGGAGGTGGCAGCGGTGGTGGTGGGGGCGCTGTTCCGCGATCGCCGTCGCCACCAGGGAATTCGGATGGTTTTACCATTGGGAAGTCGGAGACTGGTGGGTTGGGGCTGGGGGCAGGCGGGCAGATGACGGCGGCGCAGAGGATGATGGCGAAAATGGGGTGGAAGGAAGGACAGGGGCTTGGGAAGCAAGAACAAGGAATCACTACTCCATTGATGGCAAGGAAAACTGATAGAAGAGCTGGTGTTATTGTGAATGCCAGTGAGAACAGTAGTAATAAGCCTGAGAAGAAGGTGAAGAGTGTTAACTTCCATGGGGTTCCTACTAGGGTGCTCCTACTTAGGAACATGGTGGGTCCTGGTGAGGTAGATGATGAACTAGAAGAGGAGGTAGGATCAGAATGTGCCAAGTATGGAACTGTAACTCGGGTTTTGATATTCGAGATAACAGAGCCAAATTTCCCTACTGATGAAGCAGTAAGAATTTTCGTGCAATTTGAGAGATCAGAGGAAACAACCAAAGCTTTAATTGACCTTAATGGTCGGTACTTTGGAGGTAGAGTGGTGCAGGCCTCATTTTATGACGAGGAGAAGTTCGGCAAGAATGAGTTAGCTCCAATGCCAGGAGAAATTCCTGGTTTTTCCTGA 1719 0.5079 MEGTLLPLSSPTPTKPNNNFILFQRFTFPSSLNHFQKTLSTPKRTVLTASSRNSHRSSALALHETASVSEKTDASSFAASALPKIDKTGRFCSPRAARELALSIIYASCLEGLDPVRLFEKRMNERREPGYDFDKEKLLKYNHMSFGGPPVTVESVEEENELLSDIEKESAVEAEVLAAPPKLVYNKLILRFTRKLLVAARDRWDANVDNEPAGRILELSILHLAMSEMTVLDTRHQIVINEAVDLAKRFCDGAAPRIINGCLPHHQPALVGVQSTVIEEYDPARPNDYEEYRRERKRKAREAEMMRELERRRQEEEERERREREERERERERERDYGDSRLNISGEEAWRRRAAMSSGGGSGGGGGAVPRSPSPPGNSDGFTIGKSETGGLGLGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMARKTDRRAGVIVNASENSSNKPEKKVKSVNFHGVPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPTDEAVRIFVQFERSEETTKALIDLNGRYFGGRVVQASFYDEEKFGKNELAPMPGEIPGFS 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g01291 572 MobiDBLite consensus disorder prediction 305 348 - -
Adu04g01291 572 Coils Coil 289 335 - -
Adu04g01291 572 PANTHER SPLICING FACTOR 45 SPF45 272 563 IPR040052 GO:0045292
Adu04g01291 572 SUPERFAMILY RNA-binding domain, RBD 469 555 IPR035979 GO:0003676
Adu04g01291 572 SUPERFAMILY NusB-like 92 266 IPR035926 -
Adu04g01291 572 SMART rrm2_1 468 549 IPR003954 GO:0003676
Adu04g01291 572 Pfam G-patch domain 402 441 IPR000467 GO:0003676
Adu04g01291 572 ProSiteProfiles G-patch domain profile. 399 445 IPR000467 GO:0003676
Adu04g01291 572 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 467 553 IPR000504 GO:0003723
Adu04g01291 572 Pfam NusB family 218 264 IPR006027 GO:0003723|GO:0006355
Adu04g01291 572 Gene3D - 466 552 IPR012677 -
Adu04g01291 572 SMART G-patch_5 397 443 IPR000467 GO:0003676
Adu04g01291 572 Gene3D - 94 270 IPR035926 -
Adu04g01291 572 MobiDBLite consensus disorder prediction 46 65 - -
Adu04g01291 572 CDD RRM_UHM_SPF45 465 561 IPR034653 -
Adu04g01291 572 MobiDBLite consensus disorder prediction 305 398 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g01291 405 440 C2H2 Transcription Factor Family AT5G26610 61.111 1.54e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g01291 K12840 - adu:107484005 468.003