Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g01273 ATGGAGAATATTGGTGATGAGTACCATCGTTATTGGGAGACCAGCATGTTCCTCCAAACCCAAGAACTCGACAACTGGGGTTTGGATGAGGCGTTGTCAGGCTACTACGATTCGAGCTCGCCGGACGGTGCGGCTTCGTCGGCGGCGTCGAAGAATATTGTGTCGGAGAGGAATAGAAGGAAGAAGCTCAATGAAAGGCTTTTTGCTCTTCGATCAGTGGTCCCCAACATCAGCAAGATGGATAAGGCTTCAATAATAAAGGATGCAATTGAGTACATACAAAAGTTGCAAGAACAAGAGAGGATAATTCAATCAGAGATAGTTGAGCTTGAGAGTGGTATGATGGTGGAGAAGAAGAACCCTAACAGCTATGAATTTGAGCATCAGGAGCTTCCAGTGTTGTTGAGGTCCAAGAAGAAGAGAACAGATGAGCTTTATGATTCTCTCAATTCTAGAAACTCCCCTATTCATATACTAGAGCTGAGAGTAACATACATGGGAGAGAAGACAATAGTGGCAGATGAAGAAGAAAAAGATCTTTTGCAGATAAAGATCCAAACAGCAATTGCAGCTCTTAATGACCCTCTAAGTCCAATGAGCATTTGA 606 0.434 MENIGDEYHRYWETSMFLQTQELDNWGLDEALSGYYDSSSPDGAASSAASKNIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIEYIQKLQEQERIIQSEIVELESGMMVEKKNPNSYEFEHQELPVLLRSKKKRTDELYDSLNSRNSPIHILELRVTYMGEKTIVADEEEKDLLQIKIQTAIAALNDPLSPMSI 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g01273 201 Coils Coil 93 113 - -
Adu04g01273 201 Pfam Helix-loop-helix DNA-binding domain 54 97 IPR011598 GO:0046983
Adu04g01273 201 Gene3D - 43 112 IPR036638 GO:0046983
Adu04g01273 201 PANTHER TRANSCRIPTION FACTOR BHLH35 1 172 - -
Adu04g01273 201 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 114 IPR036638 GO:0046983
Adu04g01273 201 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 96 IPR011598 GO:0046983
Adu04g01273 201 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 172 - -
Adu04g01273 201 SMART finulus 53 102 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g01273 Adu-Chr4 29818565 29828776 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g01273 1 173 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 57.303 2.76e-56 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Adu04g01273 HLH 2.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g01273 - - aip:107639158 328.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu04g01273 04 29818565 29828776 Adu04g01273 04 29818565 29828776 ECH
Adu01g02110 01 88336013 88339490 Adu04g01273 04 29818565 29828776 PCT