Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g01271 ATGGCGACGGAGCAAACCAAGTTCAGCGTTATGTGCAGCCTCTTCAACTGGACGCAGCGTGCCAAGTCGCCGGCCAAGAAGCGCGCAAAGTTCCGCAAGTTCCTCGACTCATTCTGCGCCGACCGCAACTTCTTCCCTGCCATTCGCCTTGTCCTCCCAAACCTCGACCGCGAGCGCGGCTCCTACGGCCTCAAGGAGTCAGTCCTCGCCATTTCCCTCATCGACGCCCTCGGCATGTCTCGCGACTCCGAAGACGCCCTTCGCCTCATTAATTGGCGCAAGGGCGGCGCCAAGACCGGCGCCAATGCCGGCAATTTCGCCCTCGTCGCCACCGAGGTACTGCAGCGCAGGCAAGGTACTGCTTCGGGTGGATTGACGATAAAGGAGGTAAATGACTTGCTTGATCAGTTGGCTGCTAGTGAAAACAGGGCCGAGAAGACTCAGGTTCTTTCTACCTTTATCCAAAAGACAAATGCACAGGAAATGAAGTGGATTATCATGATAGTCCTCAAAGATCTGAAGCTAGGAATTAGTGAAAAAAGCATTTTTCATGAATTCCATCCTGATGCTGAAGACTTATTTAATGTTACATGTGACTTAAAATTAGTGTGTGAAAAACTAAGGGATCGGAATCAGCGTCATAAGCGACAGGATATTGAAGTTGGAAAAGCTGTGCGTCCTCAGCTAGCTAAGAGAGTTGCTAATGCAGCTGAAGCATGGAAGAAGCTTCATGGGAAGGAAGTGGTTGTCGAGTGCAAATTTGATGGTGACCGCATTCAAATTCACAAAAATGGAACAGAGATACATTTCTTCTCGAGGAACTTCCTTGATCATTCAGAATATGCACATGCAATGTCAGAAATCATACAGCAAAACATTTTGGTAGATAGGTGCATACTTGATGGTGAAATGTTGGTTTGGGACAGTTCCTTGAATCGTTTTGCTGAGTTTGGCTCAAATCAGGAAATAGCCAAGGCAGCAAGGGATGGACTTGACAGTGACAGACAGTTATGCTATGTTGCATTTGATATCCTTTATTTTGGAGATACTAGTGTAATTCACCAAACTTTGAAGGAACGACATGAGATTCTCCGTAAAGTTGTGAGGCCATTGAAGGGGCGCCTTGAAATTTTAGTACCTAATGGTGGTCTTAATAGTCATTGCTCTTCTGGTGAACCATGTTGGTCATTCATTGCTCATAATGTGGACGAAGTTGAGAAATTTTTCAAAGAAACTATAGAGAACAGAGATGAGGGAATAGTTATCAAAGACCTCGGTTCTAAATGGGAGCCTAGTGATCGAAGTGGAAAGTGGCTAAAATTGAAGCCTGAGTACATTCAAGCTGGCACTGATCTGGATGTGCTTATCATAGGAGGTTATTATGGCTCTGGACGACGTGGAGGGGAGGTTGCTCAGTTCTTGGTGGGCCTTGCTGAGCGTCCATCCCCAAATACACATCCCAAGCGGTATGAATGTTACAAAGTGGAACTTCTTTGCAATGGCTGA 1506 0.4641 MATEQTKFSVMCSLFNWTQRAKSPAKKRAKFRKFLDSFCADRNFFPAIRLVLPNLDRERGSYGLKESVLAISLIDALGMSRDSEDALRLINWRKGGAKTGANAGNFALVATEVLQRRQGTASGGLTIKEVNDLLDQLAASENRAEKTQVLSTFIQKTNAQEMKWIIMIVLKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAKRVANAAEAWKKLHGKEVVVECKFDGDRIQIHKNGTEIHFFSRNFLDHSEYAHAMSEIIQQNILVDRCILDGEMLVWDSSLNRFAEFGSNQEIAKAARDGLDSDRQLCYVAFDILYFGDTSVIHQTLKERHEILRKVVRPLKGRLEILVPNGGLNSHCSSGEPCWSFIAHNVDEVEKFFKETIENRDEGIVIKDLGSKWEPSDRSGKWLKLKPEYIQAGTDLDVLIIGGYYGSGRRGGEVAQFLVGLAERPSPNTHPKRYECYKVELLCNG 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g01271 501 Pfam ATP dependent DNA ligase domain 227 442 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Adu04g01271 501 Gene3D - 1 219 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Adu04g01271 501 PANTHER DNA LIGASE 4 3 490 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Adu04g01271 501 Coils Coil 127 150 - -
Adu04g01271 501 Gene3D DNA ligase/mRNA capping enzyme 221 444 - -
Adu04g01271 501 CDD Adenylation_DNA_ligase_IV 215 447 IPR044125 GO:0005524
Adu04g01271 501 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 62 482 IPR000977 GO:0003910|GO:0005524|GO:0071897
Adu04g01271 501 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 251 259 IPR016059 GO:0003909
Adu04g01271 501 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 186 443 - -
Adu04g01271 501 Gene3D - 445 495 IPR012340 -
Adu04g01271 501 Pfam DNA ligase N terminus 8 187 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Adu04g01271 501 ProSiteProfiles ATP-dependent DNA ligase family profile. 330 479 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Adu04g01271 501 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 7 210 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Adu04g01271 501 ProSitePatterns ATP-dependent DNA ligase signature 2. 418 442 IPR016059 GO:0003909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g01271 Adu-Chr4 29803250 29810570 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g01271 215 476 Core DNA Replication Machinery Family AT1G08130 28.938 3.47e-23 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g01271 K10777 - gmx:100816002 887.871