Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g01229 ATGGATTCTTCTTCTTCTGGTTCCACATTCTACGACCTACCTCCCCTCAAGAGACTCAGATTACAACTCCAACAACAACAACAAAACACTCCCTTACCTGCCAAGAAGCGCAAAGATTCCCGAAACGCTGCGTTTTACGAAAACCTGAACCCAAATCCAATCCCTCCTTCCGCCACTGCTTATTCTTTACCCGCCAAGAAAAGAGTATGCGCTTTTCAACCCTTCCTCCCACAAAACGACGCCGTTTCACCCTTCCAAATCGACCTCAACCTCGAATACCAAGAAATCGACAAAAAGCTCCAATCTCTCCCCTCATCTCTCCAAAAGCGTCAAGAGCAATATCTTGACGGCAACGGTAACGTCAACGATTGCGATGATGTTGACGTTGACGTTGACGACGGGATTTTATGCTGTGTGTGCCAGAGCACAGACGGAGACCCTACGGATCCAATCGTATTTTGCGACGGTTGTGACCTAATGGTCCACGCTTCCTGCTACGGAAATCCGCTCTCAAAGTCAATCCCAGACGGAGACTGGTTCTGCGAACGGTGTCGTTTCAAAGACGAAGAAGCTGCTTCAGATGCATCCTCTGGTTCTTGCTGCTGCTGCTGCCTCTGTCCGGTGACCGAAGGCGCGATGAAGAAGACAACGGATAACCGTTGGGCTCACATCGTTTGCGCGCTGCTGGTGCCGGAGGTGTTCTTCTTGGATCCTGAAGGGAGAGAAGGAATCGATTGTTCTATGGTTCCGAAGAAGAGGTGGTTGGAGAGGTGCTATGTTTGTGATTCTTGTGATGGTTGTGCTGTTGTGTGCTCTGAGCCAAAGTGCGGTTTGGCGTTTCATGTTACTTGTGGGATTAAAGAGGAGCTTTGTATTGAGTATAAGCAAGGCAAGAAGGGTGCTACCATTGTTGCTGGCTTCTGCAAAACCCACACCCAAATTTGGGACAAGCAACAGCAATCAGGGAAATACAAAATTGTTGCGGTTGAAGATGAAGTGTAG 1002 0.487 MDSSSSGSTFYDLPPLKRLRLQLQQQQQNTPLPAKKRKDSRNAAFYENLNPNPIPPSATAYSLPAKKRVCAFQPFLPQNDAVSPFQIDLNLEYQEIDKKLQSLPSSLQKRQEQYLDGNGNVNDCDDVDVDVDDGILCCVCQSTDGDPTDPIVFCDGCDLMVHASCYGNPLSKSIPDGDWFCERCRFKDEEAASDASSGSCCCCCLCPVTEGAMKKTTDNRWAHIVCALLVPEVFFLDPEGREGIDCSMVPKKRWLERCYVCDSCDGCAVVCSEPKCGLAFHVTCGIKEELCIEYKQGKKGATIVAGFCKTHTQIWDKQQQSGKYKIVAVEDEV 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g01229 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 191 IPR013083 -
Adu04g01229 333 CDD PHD_BRPF_JADE_like 136 184 - -
Adu04g01229 333 ProSiteProfiles Zinc finger PHD-type profile. 134 187 IPR019787 -
Adu04g01229 333 ProSitePatterns Zinc finger PHD-type signature. 137 184 IPR019786 -
Adu04g01229 333 ProSiteProfiles Extended PHD (ePHD) domain profile. 200 312 IPR034732 -
Adu04g01229 333 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 126 329 - -
Adu04g01229 333 PANTHER PHD FINGER PROTEINS 126 329 - -
Adu04g01229 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 314 IPR013083 -
Adu04g01229 333 SMART PHD_3 257 312 IPR001965 -
Adu04g01229 333 SMART PHD_3 136 185 IPR001965 -
Adu04g01229 333 Pfam PHD-finger 137 186 IPR019787 -
Adu04g01229 333 Pfam PHD-zinc-finger like domain 203 311 - -
Adu04g01229 333 CDD ePHD 211 311 - -
Adu04g01229 333 SUPERFAMILY FYVE/PHD zinc finger 124 189 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g01229 Adu-Chr4 28004937 28006352 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g01229 12 332 C2H2 Transcription Factor Family AT3G14740 51.479 3.56e-106 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Adu04g01229 zf-HC5HC2H_2 8.2e-25 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g01229 K11380 - gmx:100786929 378.252