Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g01112 ATGAGCTGCCAAGAAAATGTTGGTGGTAGTGATATTCCTGCATGTTCTACAGCAGGGAATATTTCACATCAAGACCAGCGTTTCAGTAGCTATGTGCAGCAGCCTGCTTTTGTGAGTGGATGGATGTATGTGAATGAACAAGGGCAAATGTGTGGTCCATATATTCAGGAGCAACTATATGAGGGTTTAACTACTGGTTTCTTGCCATTTGAGCTTCCTGTCTATCCTATGATTAATGGCACAATAATGAACCCTGTGCCACTGAATTACTTCAAGCAGTTTCCTGACCATGTCTCTACTGGGTTTGCATATCTGAATTTGGGTTTCTCTGGCTCAGGGGTTCATACAAATGGTCCCTCCTCATCTATGGATATGGCAATATATGGGCAGAATCAGTCTCTTGACAATGCTGCTCCTTTGGCTGTTAACTCTGGCTCGCAGTCAGTTCCGTATTCACATGGCAATTACTGCATTAATGAACCTAACCACCAATGTTCAAAGTCAGAGTTGTTCAACAGTATGATATCTTCTCAGATGTTAGGTGAAGAACGTTGTTGGCTTTATGAGGATGAAAAGGGCATGAAACACGGTCCACATTCTATTTCAGAATTGATTTCCTGGCATCATCATGGATATCTTCAAGACTCGTCAATGATATCTCATTTTGGCAATAAGTATGGTTCCTTTCTGCTAGTTGCTGCTGTAAATGCTCTGAAAGGGGATACATCTGGAACCATTTGTAGATCAGGTTCCAACAACAATGAGCTTGGTGGTACGGTAAACTTAATCTGTGAAATATCTGAGGACATTTCTTCCCAATTGCACTTGGGTGTCATGAAATCTGCCCGCAGAGTTGTGCTCGATGGGGTTATAAGTGATATTATTGCAGAATTTTTTACTGAAAAGAAACACAAGAGGCAGAAGCTTGATTCAACTAACCTGGCTTCTGAGACCTCCGTGTCAAATGTTGCTGTGGAGATTAGTAAAGATACTGCTGTTCCGAGTGAGCATGCATCTTCCCATATTGCAGATGATCAGACTTGTCTTGAAATTTCTAGACCATCTTCAACAAGTTTTAAATCGGTTGGAAGTGTTGAGAACTTTTGGTGGTCGTATGCTGTTGTACGTAAAGTACTTGTTGATTATTGCATGCAAGTCACGTGGAATGCTGTATTTTTTGACCCTCTAGCAGAGTACTTATGTTCCTGGAGGAAAAAGAAACTTTGGTCTCATCCTAATCTTCAAATATTTGTTAATGGTTGTGGAGAATATGATGGAAAGATTAAATCTGAAGCTTTGCTTCTTGGGACAGGTTGTTCTAAATACCCTACCGATGGCTGTAATCAGTTTGGAGTGCTGACAACAGGAACAGATTCTCATTCTAAGTTACCTTCTTTATCTTCTAATGTACCCAAAGATGGAAATTTAATGGAAGGTCAAAGAGTTTCATGCACTTATAGTAACTCCAAAAATTTGACATGCATTATTGAAAGTGTGGAGAATGAGCTTCACTTCTCTTCAAAGGTGTCTTTAGCTGAATACTTTCGAAGTTTTGTTGAAAAGGAAGTGAACAAAATAATTCATTCCCCTCATGAAGACAAATTGAGTAAGGTTGCTGTTAGTGTCTCTGGTTTCTCAGAACTACACACTGGTGAAACTCCTATGAAGGAAATTCTAAATGACAAGTTAGTAGCTACTGTTAAGGCTGAAGATTCAGTTTGTGAGCCTTCATTAGCAAATCATATGTCTAATGTATTCTCGAATGCATTTGAGGAGTTGTGTGGAGGTGTAGAAGTAGTTGATGAAGGGGAAATTGGTGAACTTCCACCTGGATTTGAAGAGAACTCGCACACAATTTTCCCACCACCGAATTTGAAGATTCGACCTTCAAGGGTAGCTGAATGTAATCCTAAGATTACAGAATATGTTGCAACTGCACTGTGCCGACAAAAGTTGCATAATGAAGTCCTAGAAGAGTGGAAATCCGCTTTTTTTTATCCTACATTGAATCAAGCTTTTATGTCTAATAAGAAACGCAGTCATTCTGGTATTCATGAGAAAGGAAAAGCAAAGAAAGCAAGGAAGGAACCTTTAAATGATGCTACTTCTGGACTGGGAAAGATGAAAGGAGGAGCAAAAGGCTCTTCTGCAGTTCCTCTAGTTAATGGAAAGTATACATACCACCGCAAGAAACTGTCACACAAAGAGTTGTGTTCCTCTCAATCTGCTTCAGTGGATGATTCGAGGCCAGGGAAGCAGAACGTGTGTAAGTTAAGGAATTATGTTTTGGGAGATTTGAATGAAACTGCAGAAGTCAAAATAGCTGCTAAGCGTGGAAAGGCTAGTGTGGTTAAAGGGAAGAAAGATAAATCTAATAAGAGCAGGTCATCTATCATTGTCAATGGTAGCACAGATGGTGATCGATTGTCCTTGAAGAATAAAACTAGTTCGAAAGCATTGAAACTTTCACATACTGATGGTGTTGTGGATGCCGTAAAATCTAATGAAAGGAGGCTTTCTGCGTCAACAAATAATAGTGTTGGAATGAAGAAGGTGGTTAAAAGCAATGCTGAGGATGTCCTAAAATCAAATGAAAAGAAGCTTTCAGCATCAACAAATAATAGTGTTTCCATGAAGAAGGTGGCTAAAAGCAATTGCAGTGATGGCACCATTAAGGGGAAGGCTGCTGGTCATTGCTCCAAACAGAGACCAAGTGCAAATAAAATGTCGAAACAAAAAAGGAAACATTCAACAGATGGTATGCCATCCTTACATCCTGCCAAGTCTTTGAAAATTTCAAACGATGGTGCAAAGCATGGAGCAAGCAAACATGCTACTATTGCAAGGAGGAATTCTGCCAAATCCAAGCCATTGAATTTATGTCCTAGATCTGATGGATGTGCTAGGACTTCCATTGATGGGTGGGAATGGCATAGATGGTCTCAAAGTGCTACTCCTGCATATAGAGCACGTGTCAGGGGCATTGCCTGTATACAAAACAAGTGCATAGATTCAGATAATAATTTATTGCAGCTATCGAATAATAAGGGTCTTTCTGCAAGAACAAATAGGATGAAATTGCGCAACCTTCTTGCTGCTGCCGAGGGTGCAGATCTTCTGAAAGTGCCTCAATTGAAGGCAAGGAAAAAACGATTACGTTTTCAAAGGAGCAAGATACATGACTGGGGTCTTGTTGCAATGGAGCCTATAGAGGCAGAGGACTTCGTGATTGAATATGTTGGAGAACTAATTCGTCCTCGGATATCTGATATCCGTGAACGTCAGTATGAGAAGATGGGAATTGGAAGCAGTTACCTTTTCAGACTTGATGATGGTTATGTGGTTGATGCTACAAAGAGAGGTGGGATTGCAAGATTTATTAACCATTCTTGTGAGCCCAACTGCTATACAAAGGTCATCTCTTTCGAGGGTCAAAAGAAGATTTTCATATATTCAAAACGGCATATTGCTGCTGGTGAAGAGATTACTTATAATTATAAGTTCCCGTTGGAGGATAAAAAGATTCCCTGCAACTGTGGTTCCAGAAAGTGTCGTGGATCACTTAATTAG 3570 0.4008 MSCQENVGGSDIPACSTAGNISHQDQRFSSYVQQPAFVSGWMYVNEQGQMCGPYIQEQLYEGLTTGFLPFELPVYPMINGTIMNPVPLNYFKQFPDHVSTGFAYLNLGFSGSGVHTNGPSSSMDMAIYGQNQSLDNAAPLAVNSGSQSVPYSHGNYCINEPNHQCSKSELFNSMISSQMLGEERCWLYEDEKGMKHGPHSISELISWHHHGYLQDSSMISHFGNKYGSFLLVAAVNALKGDTSGTICRSGSNNNELGGTVNLICEISEDISSQLHLGVMKSARRVVLDGVISDIIAEFFTEKKHKRQKLDSTNLASETSVSNVAVEISKDTAVPSEHASSHIADDQTCLEISRPSSTSFKSVGSVENFWWSYAVVRKVLVDYCMQVTWNAVFFDPLAEYLCSWRKKKLWSHPNLQIFVNGCGEYDGKIKSEALLLGTGCSKYPTDGCNQFGVLTTGTDSHSKLPSLSSNVPKDGNLMEGQRVSCTYSNSKNLTCIIESVENELHFSSKVSLAEYFRSFVEKEVNKIIHSPHEDKLSKVAVSVSGFSELHTGETPMKEILNDKLVATVKAEDSVCEPSLANHMSNVFSNAFEELCGGVEVVDEGEIGELPPGFEENSHTIFPPPNLKIRPSRVAECNPKITEYVATALCRQKLHNEVLEEWKSAFFYPTLNQAFMSNKKRSHSGIHEKGKAKKARKEPLNDATSGLGKMKGGAKGSSAVPLVNGKYTYHRKKLSHKELCSSQSASVDDSRPGKQNVCKLRNYVLGDLNETAEVKIAAKRGKASVVKGKKDKSNKSRSSIIVNGSTDGDRLSLKNKTSSKALKLSHTDGVVDAVKSNERRLSASTNNSVGMKKVVKSNAEDVLKSNEKKLSASTNNSVSMKKVAKSNCSDGTIKGKAAGHCSKQRPSANKMSKQKRKHSTDGMPSLHPAKSLKISNDGAKHGASKHATIARRNSAKSKPLNLCPRSDGCARTSIDGWEWHRWSQSATPAYRARVRGIACIQNKCIDSDNNLLQLSNNKGLSARTNRMKLRNLLAAAEGADLLKVPQLKARKKRLRFQRSKIHDWGLVAMEPIEAEDFVIEYVGELIRPRISDIRERQYEKMGIGSSYLFRLDDGYVVDATKRGGIARFINHSCEPNCYTKVISFEGQKKIFIYSKRHIAAGEEITYNYKFPLEDKKIPCNCGSRKCRGSLN 1189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g01112 1189 Gene3D SET domain 980 1189 IPR046341 -
Adu04g01112 1189 Gene3D - 172 253 IPR035445 -
Adu04g01112 1189 SMART PostSET_3 1173 1189 IPR003616 -
Adu04g01112 1189 SUPERFAMILY SET domain 1045 1186 IPR046341 -
Adu04g01112 1189 MobiDBLite consensus disorder prediction 677 713 - -
Adu04g01112 1189 ProSiteProfiles SET domain profile. 1050 1167 IPR001214 GO:0005515
Adu04g01112 1189 CDD SET_SETD1 1038 1185 - -
Adu04g01112 1189 ProSiteProfiles Post-SET domain profile. 1173 1189 IPR003616 -
Adu04g01112 1189 MobiDBLite consensus disorder prediction 889 953 - -
Adu04g01112 1189 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 1 1189 IPR044570 GO:0042800|GO:0051568
Adu04g01112 1189 SMART set_7 1050 1173 IPR001214 GO:0005515
Adu04g01112 1189 Pfam SET domain 1062 1166 IPR001214 GO:0005515
Adu04g01112 1189 ProSiteProfiles GYF domain profile. 183 239 IPR003169 GO:0005515
Adu04g01112 1189 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 1 1189 - -
Adu04g01112 1189 SUPERFAMILY GYF domain 178 235 IPR035445 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g01112 Adu-Chr4 21463725 21470409 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g01112 1049 1189 C2H2 Transcription Factor Family AT2G23740 34.969 2.44e-17 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Adu04g01112 SET 4.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g01112 - - aip:107636228 2287.3