LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu04g01065	ATGGCATCATCACAAGTTGAAATTGCTTCGTCTTCGCCCTTTGGTTTGGTTCTGAGGGACCGTAACCACCGTGGCGATGGATGCAGAGAAAGCAATGTTGTTAATAAGGCCACACATGCTGCTCTTCAAAGGAACATCAAGAACTTCGTCATGGACCACCTTAACATGTCCATGTCCATGTCCAACTCTGATTCAACAAGAAATCTCAACGAGAACAATTCCGCCCATTGGAACGAAATTCATCATAATCAAGATCATGACCATGACAACCAACATCGCCGCCACCACCGGCGCCACCGCAACGTGTCGAATCTTCATGTCTCAAGTGCCATGGAGTTCAAGGATGGATCCTCATTGAACTCTTTGATTAGCCCGAGACAAACCCGGCTTCTTGATCGCTGGGCCGCGAAACAAGCCCGGGAGATTGTTTCAAATTTAGAGAGTGAGGCTGGGTTGTTGTCAATCGATAATAACAAGAAAGAACTTGGAAGCACAGGTAGTTGCAACTCTGATGGTGATGATAACAAGTGTGTAGATATCTCGAACCTTGCTGCTTCTTCACTTGTTCAGATATGGGAGAAGAGGCTCAGTGGATCCAAGCCTGAAACGACGGCGTCTAATGGCGCCAAAACTAGTCCCACTGCTGTTACTTCCACCAATAATTGTGATTCCGAGGCAGGGGAATCTTCTTCCTGCGCCGTGGCGAACGAGGACTGGGAAACACACAGTGATCAGTCCTTTTCGCCACAGTCGCGGTGGTCGTCTTGCGAGACTGCAACAACAGAGGCAGAAAGGCCGGTTTCTGTTGCAGACATAATCAAGAGGCTAACTACACCAAGTGTCCATGGCGATGACAATGAATCTGAGGGGTTTATTAGCAGCGTGGCAAGCTCTCCTTGCAGAGATTTGGCACCGGAGAATTCTGAGAGGAGGGCTTTTCCCCTCATGATTGGTGCCCCGGGAAGGATTCGAGGCCGCCGGATTTTCACCGATATGCTTATGCAGCTGGAGAGGGACCGCCGAGGGGAGCTTAACCACCTGGCAGAACGCCGAGCCGTGTCGAGGTTCCCTCAAAAAGGACGAATTCAGTCATTGCTTCGATTAAGATTGTTGCAGCGGAATGCAGCGGCTGAGAATGATAAATCTCAACAGAAATCAACATTATCTAGACAGAATAAACAGACACAAGAATCTGCTGTTGTTATGGAACGAAGGGGGAAATTTAGCACCGCAGTTGAACACAGAAATGCGGAACAGGCAGAAGTAGCTCATCCAACAACGTCACTGGTACAGACAGTTACAAATCCTGTAGCGTCGGATAAGTCTGCTGGCAAAGACACTTGCAACCAGACTGTTGTTCATGAGACTGCTAATAGCTCTGGAGAATCCACGCGAGTATCAATCCCTGAGACTAATGCAGACCACAATAAAGAGAAAGCACATGCAAGTTCACATGTGACACTGCAAGAAACATGTGCAGAGAAGGGAGAGATGCAACAGATCAACACATTGATGAAATACAAAGAGATGCTTGCCACTTCTCAAAATGAGGATATACGTATTCTCCTTGAAAGAAAAACAGTCTCGACTTTCCTTTCCAGCAGCTTCCGGGCAGTGATAGATAGATTGATGAACTCCCATAAGGGAACACAGACGCAACTAGTCAATTGCCAAGATGATGAGGACGAAAACCAAATTCTGATGGCGTATCTACAAGAACGCATGCGTTCTGCAAAATCTCCTCAAGAAGACAAACAAGAGGGAGGAGGGGAGGAGGAAAAGCGAGACGAGATGCAAAATGCTGGACAAGAAGAGGAGCAGAGGCAGGAGCAGGAGCGGTGTCATGAAGATGTTGAGTATTTTCAACAATCCTCATCACCATGCCCTTCAAGAACATGGAATTATAAAGACAATGAAACCTGTGATGATTCTGATGGAGTAGTATTTGCATGTGCATCTGCATCTACATATTCTCCTTCACATTCACAACCCTCTCAGTTTCAATCTGCCTATCATGATAATAGGCGAAGTTCTTCACCGCCTAATCATCATTCAATGGAAATGGAACTCATCTATGATTTGAGAAGACAAATGGAGCAACTTCATCATGAGATGTCTGAGCTAAGGAAATCGATTAAGAGCTGCGTGGATATGCAGATTCAGATGCAATTACAACAGCAATCCATGGTTCAAACAGTTAACAAAGAAGAAAACATGACGCAGAAGAAGGTACCAAAAAAAGGCAATTGCTGTATATGCCATGATAATAAAGCTGACTCAATTTTATACAGGTGTGGGCACATGTGTGCGTGTCTAAAGTGTGCCAATGAGCTGCAATGGAATGGTGGAAAGTGTCCAATTTGTCGAGCCAAAATATTAGATGTTGTTCGAGTATACATTGATGCTTAG	2409	0.4566	MASSQVEIASSSPFGLVLRDRNHRGDGCRESNVVNKATHAALQRNIKNFVMDHLNMSMSMSNSDSTRNLNENNSAHWNEIHHNQDHDHDNQHRRHHRRHRNVSNLHVSSAMEFKDGSSLNSLISPRQTRLLDRWAAKQAREIVSNLESEAGLLSIDNNKKELGSTGSCNSDGDDNKCVDISNLAASSLVQIWEKRLSGSKPETTASNGAKTSPTAVTSTNNCDSEAGESSSCAVANEDWETHSDQSFSPQSRWSSCETATTEAERPVSVADIIKRLTTPSVHGDDNESEGFISSVASSPCRDLAPENSERRAFPLMIGAPGRIRGRRIFTDMLMQLERDRRGELNHLAERRAVSRFPQKGRIQSLLRLRLLQRNAAAENDKSQQKSTLSRQNKQTQESAVVMERRGKFSTAVEHRNAEQAEVAHPTTSLVQTVTNPVASDKSAGKDTCNQTVVHETANSSGESTRVSIPETNADHNKEKAHASSHVTLQETCAEKGEMQQINTLMKYKEMLATSQNEDIRILLERKTVSTFLSSSFRAVIDRLMNSHKGTQTQLVNCQDDEDENQILMAYLQERMRSAKSPQEDKQEGGGEEEKRDEMQNAGQEEEQRQEQERCHEDVEYFQQSSSPCPSRTWNYKDNETCDDSDGVVFACASASTYSPSHSQPSQFQSAYHDNRRSSSPPNHHSMEMELIYDLRRQMEQLHHEMSELRKSIKSCVDMQIQMQLQQQSMVQTVNKEENMTQKKVPKKGNCCICHDNKADSILYRCGHMCACLKCANELQWNGGKCPICRAKILDVVRVYIDA	802

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu04g01065	802	MobiDBLite	consensus disorder prediction	577	619	-	-
	Adu04g01065	802	Pfam	Zinc finger, C3HC4 type (RING finger)	747	794	-	-
	Adu04g01065	802	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	732	801	IPR013083	-
	Adu04g01065	802	MobiDBLite	consensus disorder prediction	655	676	-	-
	Adu04g01065	802	MobiDBLite	consensus disorder prediction	574	631	-	-
	Adu04g01065	802	MobiDBLite	consensus disorder prediction	376	399	-	-
	Adu04g01065	802	MobiDBLite	consensus disorder prediction	198	261	-	-
	Adu04g01065	802	PANTHER	BNAC05G24000D PROTEIN	506	801	-	-
	Adu04g01065	802	Coils	Coil	374	394	-	-
	Adu04g01065	802	MobiDBLite	consensus disorder prediction	82	102	-	-
	Adu04g01065	802	MobiDBLite	consensus disorder prediction	376	402	-	-
	Adu04g01065	802	PANTHER	BNAC05G24000D PROTEIN	1	498	-	-
	Adu04g01065	802	PANTHER	BNAC05G24000D PROTEIN	1	498	-	-
	Adu04g01065	802	Coils	Coil	691	711	-	-
	Adu04g01065	802	ProSiteProfiles	Zinc finger RING-type profile.	750	789	IPR001841	-
	Adu04g01065	802	PANTHER	BNAC05G24000D PROTEIN	506	801	-	-
	Adu04g01065	802	CDD	mRING-HC-C3HC5_NEU1	749	789	-	-
	Adu04g01065	802	MobiDBLite	consensus disorder prediction	655	684	-	-
	Adu04g01065	802	SUPERFAMILY	RING/U-box	749	794	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu04g01065	Adu-Chr4	19616377	19620167	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu04g01065	750	798	C3H Transcription Factor Family	AT3G06140	38.776	2.36e-06	48.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu04g01065	-		-	ahf:112741787	1315.06