LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu04g01050	ATGGAAGCTTACGGTGGGATTTTGGTTGATGAGAAAGCCGTTAGGGTCGAGAACGCTTTCCTCGAATTCCTCAAGAGCTTCAGGTCCGGGAACCGGAACGAGCTCCACTATGAGGCGGAGATAGAAGTAATGAGGGCCAACGAATCCAACACAATGTTCATCGATTTCGAACACGTCATCACTTTCAGTGACCTTCTCCAGAAAGCTATCTCTGATGAATATTTGAGATTTGAGCCTTATCTGAAGAATGCTTGCAAGAGATTCGTTATGGAACTGAAGCCGACCTTCATATCTGATGATAACCCCAACAAAGACATCAATATTGCCTTCTACAACCTTCCAATCGTTAAGCGATTGAGGGAACTGGCTACATCAGAAATTGGAAGACTAGTATCCGTGACTGGGGTAGTAACCAGGACAAGTGAGGTTCGTCCTGAGCTTATCCAGGGAACATTCAAGTGCTTAGAGTGTGGTGGGGTTATAAAAAATGTGGAACAAGAATTCAAGTATACCGAGCCCACAATCTGCCCGATTCCAACCTGTAACAAACGAGCAAGATGGCTACTGATGCGCCAAGAGAGCAAATTTGCTGACTGGCAACGGGTCAGGATGCAAGAGACTTCCAAAGAGATACCTGCTGGGTCGCTGCCTAGGTCCTTGGATGTTATTCTTCGTCACGAGATTGTGGAACAGGCCAGGGCTGGTGACACGGTGATTTTCACAGGAACTGTAATTGTTATTCCTGACCTTTTGGCATTGGCATCCCCTGGAGAGAGATCAGAATGCCGCCGGGAAGGTTCTCAACGCAAGGGTCCTGCAGCTGGAAATGAAGGTGTTAGGGGCCTTAGGGCCCTTGGAGTCAGAGACCTCTCTTATCGCCTGGCCTTTATTGCCAACTCCGTTCAGATTTGCGATGGTAGAAGAGATGTAGACATCCGAAATAGAAAGAAGGACTCTGATGATGATGATATGCAGTTTACTACACAGGAGCTGGATGAAATACAACGAATGAGGAATATTCCAGATTTCTTCAAGAAACTTGTTAACAGCGTTGCTCCAACTGTTTTTGGTCATCAAGACATAAAGAGAGCAATCCTTCTTATGCTTATGGGCGGTGTCCACAAATTAACTCATGAAGGCATCAACCTCAGAGGAGATATAAATGTTTGCATTGTTGGGGATCCCAGCTGTGCAAAGAGTCAATTTCTCAAGTATACTTCAGGCATAGTTCCAAGATCTGTTTATACATCTGGGAAATCATCATCTGCTGCTGGATTGACTGCAACAGTTGCTAAGGAACCAGAAACTGGGGAGTTTTGTATTGAGGCTGGTGCATTGATGCTTGCAGACAATGGCATTTGCTGCATTGATGAATTTGACAAGATGGAGATCAGGGATCAGGTTGCAATTCATGAGGCCATGGAACAGCAAACAATTAGTATCACAAAAGCAGGAATTCAAGCAACACTTAATGCCCGCACTTCTATTCTTGCCGCTGCCAACCCTGCTGGGGGACGCTATGACAAGTCTAAACCACTTAAGTACAATGTGGCTCTTCCACCTGCTATACTCTCGAGGTTTGATCTTGTATATGTTATGATTGATGATCCAGACGATCAGACAGATTACCACATAGCTCATCATATTGTGAGAGTTCATCAAAAGCGTGAAGAGGCTCTTACTCCGACTTTCACCACAGCGCAACTGAAGCGTTATATAGCTTATGCAAAAACTCTCAAACCAAAGCTTACGGCAGAGGCCAAAAAAATACTAGTAGACTCTTATGTGGCTCTCCGCAGAGGTGATACAAATCCTGGGAGTAGGGTTGCATATCGTATGACAGTTAGGCAGTTGGAGGCATTAATCAGGCTGTCTGAAGCCATTGCACGATGTCATTTGGAAAATCAGGTGCAACCTCAACATGTTAACTTAGCAGTGAAGCTGCTGAAAACATCCATAATAAGTGTGGAGTCTGGTGACATCGATCTATCTGAGTTTCAAGAAGAGAACCAGGGTGATGATGGTGATAGAAATGATAATGATAGAGATGACGGGGCTGATATTAAAAGAGAAGCTGGTAGTCAAGAGGGAACCCAGCAAGCTGCTGGAACAAATGAAAATGCAGCAGATGGATCTAACCCCCAGCCGAAGAAACTAATCATAAGTGATGAATACTTTCAGAGAGTGACCAGGGCACTCATCATGCATCTTAGACAGCACGAAGAAACTGTTCTGCAACAAGGAACTGGGTTGGCTGGAATAAGGCAACGAGATTTGATTCAATGGTATGTAGACCAACAAAATGAGAAAAACGCTTACAGTTCTATGGAGGAGGTTAAAGCAGAACTTTCCAGACTCAAAGCTATTATAGAGAGTTTAATCCGAAGAGAGGGCTATTTGATAGTGCTGGATGATGGGATGCAAGAAGCAGCAGAAGGTGCGGCTCCAGAGCACGTATCTAGAAATGATCGAATTTTAGCCGTGGCTCCTAATTATTACATTGATTGA	2508	0.4446	MEAYGGILVDEKAVRVENAFLEFLKSFRSGNRNELHYEAEIEVMRANESNTMFIDFEHVITFSDLLQKAISDEYLRFEPYLKNACKRFVMELKPTFISDDNPNKDINIAFYNLPIVKRLRELATSEIGRLVSVTGVVTRTSEVRPELIQGTFKCLECGGVIKNVEQEFKYTEPTICPIPTCNKRARWLLMRQESKFADWQRVRMQETSKEIPAGSLPRSLDVILRHEIVEQARAGDTVIFTGTVIVIPDLLALASPGERSECRREGSQRKGPAAGNEGVRGLRALGVRDLSYRLAFIANSVQICDGRRDVDIRNRKKDSDDDDMQFTTQELDEIQRMRNIPDFFKKLVNSVAPTVFGHQDIKRAILLMLMGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYTSGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMEIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKREEALTPTFTTAQLKRYIAYAKTLKPKLTAEAKKILVDSYVALRRGDTNPGSRVAYRMTVRQLEALIRLSEAIARCHLENQVQPQHVNLAVKLLKTSIISVESGDIDLSEFQEENQGDDGDRNDNDRDDGADIKREAGSQEGTQQAAGTNENAADGSNPQPKKLIISDEYFQRVTRALIMHLRQHEETVLQQGTGLAGIRQRDLIQWYVDQQNEKNAYSSMEEVKAELSRLKAIIESLIRREGYLIVLDDGMQEAAEGAAPEHVSRNDRILAVAPNYYID	835

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu04g01050	835	Pfam	MCM P-loop domain	331	553	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Adu04g01050	835	Pfam	MCM OB domain	119	247	IPR033762	-
	Adu04g01050	835	ProSitePatterns	MCM family signature.	452	460	IPR018525	GO:0003677\|GO:0005524\|GO:0006260
	Adu04g01050	835	PANTHER	DNA REPLICATION LICENSING FACTOR MCM6	10	787	-	-
	Adu04g01050	835	ProSiteProfiles	MCM family domain profile.	343	549	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Adu04g01050	835	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	353	653	IPR027417	-
	Adu04g01050	835	PRINTS	Mini-chromosome maintenance (MCM) protein 6 signature	74	86	IPR008049	GO:0003677\|GO:0003678\|GO:0005524\|GO:0005634\|GO:0006270\|GO:0042555
	Adu04g01050	835	PRINTS	Mini-chromosome maintenance (MCM) protein 6 signature	116	128	IPR008049	GO:0003677\|GO:0003678\|GO:0005524\|GO:0005634\|GO:0006270\|GO:0042555
	Adu04g01050	835	PRINTS	Mini-chromosome maintenance (MCM) protein 6 signature	166	183	IPR008049	GO:0003677\|GO:0003678\|GO:0005524\|GO:0005634\|GO:0006270\|GO:0042555
	Adu04g01050	835	PRINTS	Mini-chromosome maintenance (MCM) protein 6 signature	219	230	IPR008049	GO:0003677\|GO:0003678\|GO:0005524\|GO:0005634\|GO:0006270\|GO:0042555

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu04g01050	Adu-Chr4	19269230	19274968	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu04g01050	1	835	Core DNA Replication Machinery Family	AT5G44635	72.832	0.0	1287

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu04g01050	K02542		-	gmx:100787290	1370.91

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