LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu04g01044	ATGATCTTGAAAGTCCTTCGAACTGTTCCAGACTTACTTTTAGTCAAACCCGAGAACACTTTGCAGCCAAAGTTTGATTTTTTCAAGTCAAAAGGGTTTTCTGTCTCTGACATTCACAGCATGATATTAACATCCCCTGAAATTCTCAAAAGAAGCTTGAATAATGAGATCATTCCCTGCTTCAATTTCCTTGACAACATGTTTGAATGTAAGCACAACCTCATGAAAACTGTTGTAAGCTATTCAGGTGTTCTACATATCTTTGCCAAACGTATTGAACCTAATATCAAGCTGCTGAGAGAAGAGGGTGTTCCTGAATCACACATTCTTAGGTTGTTAGAGTACTATGGCAAGACAATTAAGGTATGTCCTACGCGATTTAAGAAGGCAGTGGAGGAAGTGAAGGAGATGAAGACTGATCCACTCAAGTTGCAATTTGTTATATATGTTCATATAAAGTTACATCTGAGCAAATCCACATGGGAAAGAAAGAAAGGTATATATAGAAAATGGGGTTGGACCGAGGATGATATTTCTAAAGCATTTAGAACCCACCCGTTCTGTATGTGCACTTCAGACAGTAAGATTGAGGCGGTCATGGATTTTCTGGTGAACACATTGGGCTGCAAATCTTCTGACATTATCAGATGTCCATCACTGTTGACCATGAGCTTGAGAAAGCGAATTATTCCAAGGGGATCTGTTGTTAAAGCTTTGCTGTCGAAGGGTCTGATTAAGAAGCTGAGCTGGACTGTATTTCGGTATAATGAATTGGAGTTCCTGGATAAGTTTGTCCATTGTTATGACAAGGAAGCCAATGAGCTATTGAAGTTGTATCGGGTAAGTTGGCTTAAGAATGTAAGAGAAATGAATGTGTCTACTCCCTGA	888	0.3919	MILKVLRTVPDLLLVKPENTLQPKFDFFKSKGFSVSDIHSMILTSPEILKRSLNNEIIPCFNFLDNMFECKHNLMKTVVSYSGVLHIFAKRIEPNIKLLREEGVPESHILRLLEYYGKTIKVCPTRFKKAVEEVKEMKTDPLKLQFVIYVHIKLHLSKSTWERKKGIYRKWGWTEDDISKAFRTHPFCMCTSDSKIEAVMDFLVNTLGCKSSDIIRCPSLLTMSLRKRIIPRGSVVKALLSKGLIKKLSWTVFRYNELEFLDKFVHCYDKEANELLKLYRVSWLKNVREMNVSTP	295

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu04g01044	295	Pfam	mTERF	2	119	IPR003690	GO:0003690\|GO:0006355
	Adu04g01044	295	Pfam	mTERF	154	257	IPR003690	GO:0003690\|GO:0006355
	Adu04g01044	295	PANTHER	TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED	2	282	-	-
	Adu04g01044	295	PANTHER	CGI-12 PROTEIN-RELATED	2	282	IPR003690	GO:0003690\|GO:0006355
	Adu04g01044	295	Gene3D	Transcription termination factor 3, mitochondrial	68	278	IPR038538	-
	Adu04g01044	295	SMART	mt_12	39	71	IPR003690	GO:0003690\|GO:0006355
	Adu04g01044	295	SMART	mt_12	3	34	IPR003690	GO:0003690\|GO:0006355
	Adu04g01044	295	SMART	mt_12	75	105	IPR003690	GO:0003690\|GO:0006355
	Adu04g01044	295	SMART	mt_12	179	210	IPR003690	GO:0003690\|GO:0006355
	Adu04g01044	295	SMART	mt_12	211	245	IPR003690	GO:0003690\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu04g01044	Adu-Chr4	19207623	19209284	Tandem

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	mTERF	Adu04g01044		mTERF	6e-15	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu04g01044	K15032		-	twl:120002213	254.603