Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g00907 ATGTCTCTGAGGCCTAGTGAGAGGACGAAGGTTCGCCGGAACCGGTACAAGGTGGCGGTGGACGCCGATGAGGGTCGCCGGAGGAGGGAGGACAACATGGTGGAGATCCGAAAGAGTAAGCGCGAGGAGAGCCTCCTCAAGAAGCGCCGCGAGGGCCTCCAAGCTCAACAGCTTCTCCAGCAGCAGCAACAATTTCCAACCAATGTCCAAGCCTCATCCATCATGGAGAAAAAGTTGGAGAGTCTTCCTGCTATGGTCGCTGGGGTGTTGTCCAATGATAACAGCCAGCAACTGGAAGCTACCACACAATTTAGGAAGTTGCTCTCAATCGAGCGCAGCCCACCAATTGAGGAAGTTATCCAAGCTGGTGTTGTGCCACGGTTTGTTGAGTTTCTCCATAGGGACGATTTCCCCCAGCTTCAGTTTGAGGCTGCATGGGCTCTCACAAACATAGCGTCTGGAACTTCTGAGAACACTAAGGTGGTAATTGATCACGGGGCAGTCCCAATATTTGTGAAGTTACTTGGTTCTCCAAGTGATGATGTTCGAGAACAGGCTGTTTGGGCTTTGGGAAATGTCGCTGGTGACTCTCCTAGGTGCCGTGATCTTGTTCTCAGCCATGGTGCTTTGATCCCACTATTAGCCCAGCTGAATGAGCATGCTAAACTTTCAATGCTGAGAAATGCCACATGGACTCTGTCAAACTTCTGCAGGGGGAAGCCACAGCCTCCATTTGAACATGTGAAGCCAGCACTTCCAACTCTTGAGCGGTTGGTCTTTTCAAATGATGAAGAGGTTCTGACAGATGCATGCTGGGCACTTTCGTATCTTTCTGATGGAACAAATGACAAAATCCAAGCAGTTATTGAGGCAGGTGTATGTAGCAGGCTGGTGCAGCTTCTTTTGCACCCATCTCCTTCGGTGCTGATTCCTGCTCTTCGTACTGTGGGAAATATTGTGACAGGGGACGACATTCAAACTCAGGCTATTATCAATCATGGTGCACTCCCATGCCTTATGAGCCTGTTGACGCATAATCACAAAAAGAGCATCAAGAAAGAAGCTTGCTGGACTATTTCAAACATTACAGCTGGAAATAGAGATCAAATACAGGCAAGCCGGTTAATCCCAATTATTTGGTGCTCTATTGATGCTGTTATTGAAGCTGGTCTGATTGCTCCCCTTGTCAATCTTCTTCAAAATGCTGAGTTTGACATTAAAAAAGAAGCTGCATGGGCAATCTCTAATGCTACATCTGGTGGTAGTCATGAGCAGATCAAGTATTTGGTTAACCAAGGTTGCATTAAGCCTCTGTGTGATCTGCTTGTTTGTCCCGACCCAAGAATTGTCACCGTCTGTTTAGAAGGTCTGGAGAATATTCTAAAGGTCGGGGAATCTGAGAAGGCCATGGGTAACAGTGGAGATGTTAACTTGTATGCTCAGATGATTGATGATGCTGAAGGATTGGAGAAAATTGAAAACCTGCAGAGTCATGACAATAATGAAATATATGAGAAGGCCGTTAAAATTCTCGAAACATATTGGTTGGAGGATGAAGATGAGACACTACCTCCAGGCGATGTTGCTCAACCTGGTTTCAGTTTTGGTGGCAATGAGGTTCCAGTCCCATCTAGCGGATTCAACTTTAGTTGA 1653 0.4688 MSLRPSERTKVRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLLKKRREGLQAQQLLQQQQQFPTNVQASSIMEKKLESLPAMVAGVLSNDNSQQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLHRDDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEHVKPALPTLERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCSRLVQLLLHPSPSVLIPALRTVGNIVTGDDIQTQAIINHGALPCLMSLLTHNHKKSIKKEACWTISNITAGNRDQIQASRLIPIIWCSIDAVIEAGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQIKYLVNQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGESEKAMGNSGDVNLYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEDEDETLPPGDVAQPGFSFGGNEVPVPSSGFNFS 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g00907 550 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 123 166 IPR000225 GO:0005515
Adu04g00907 550 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 390 418 IPR000225 GO:0005515
Adu04g00907 550 SUPERFAMILY ARM repeat 12 521 IPR016024 -
Adu04g00907 550 Gene3D - 80 516 IPR011989 -
Adu04g00907 550 PANTHER IMPORTIN SUBUNIT ALPHA 2 540 - -
Adu04g00907 550 Coils Coil 36 56 - -
Adu04g00907 550 Pfam Importin beta binding domain 12 102 IPR002652 GO:0006606|GO:0061608
Adu04g00907 550 Gene3D - 11 50 IPR036975 GO:0006606
Adu04g00907 550 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 334 369 IPR000225 GO:0005515
Adu04g00907 550 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Adu04g00907 550 PANTHER IMPORTIN ALPHA 2 540 - -
Adu04g00907 550 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 166 208 IPR000225 GO:0005515
Adu04g00907 550 SMART arm_5 382 419 IPR000225 GO:0005515
Adu04g00907 550 SMART arm_5 112 153 IPR000225 GO:0005515
Adu04g00907 550 SMART arm_5 196 238 IPR000225 GO:0005515
Adu04g00907 550 SMART arm_5 155 195 IPR000225 GO:0005515
Adu04g00907 550 SMART arm_5 422 462 IPR000225 GO:0005515
Adu04g00907 550 SMART arm_5 323 364 IPR000225 GO:0005515
Adu04g00907 550 SMART arm_5 240 279 IPR000225 GO:0005515
Adu04g00907 550 SMART arm_5 281 321 IPR000225 GO:0005515
Adu04g00907 550 PIRSF Importin_alpha 2 549 IPR024931 GO:0005737|GO:0006606|GO:0061608
Adu04g00907 550 Pfam Armadillo/beta-catenin-like repeat 251 278 IPR000225 GO:0005515
Adu04g00907 550 Pfam Armadillo/beta-catenin-like repeat 423 460 IPR000225 GO:0005515
Adu04g00907 550 Pfam Armadillo/beta-catenin-like repeat 155 194 IPR000225 GO:0005515
Adu04g00907 550 Pfam Armadillo/beta-catenin-like repeat 326 364 IPR000225 GO:0005515
Adu04g00907 550 Pfam Armadillo/beta-catenin-like repeat 113 153 IPR000225 GO:0005515
Adu04g00907 550 Pfam Armadillo/beta-catenin-like repeat 197 238 IPR000225 GO:0005515
Adu04g00907 550 Pfam Armadillo/beta-catenin-like repeat 383 418 IPR000225 GO:0005515
Adu04g00907 550 Pfam Armadillo/beta-catenin-like repeat 282 320 IPR000225 GO:0005515
Adu04g00907 550 Pfam Atypical Arm repeat 477 523 IPR032413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g00907 Adu-Chr4 14253980 14257346 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g00907 148 410 U-box Gene Family AT1G23030 20.913 7.47e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g00907 K15042 - gmx:100780020 972.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu04g00907 04 14253980 14257346 Adu04g00907 04 14253980 14257346 ECH
Adu04g00907 04 14253980 14257346 Adu06g00434 06 5157161 5161556 ECH