Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g00880 ATGCTGCTAGCTGATGACAAGATATGGGATCAGAATGGCTTTAATGATTTCGTACGCAAAAGCCTAGGACCATCGGTTGGTGCATTTGATGGAAATCTGAAGCTGGGAATTTTGCCTGCAAGTATTTTCTGTAGTGGCCATACATATACAGACATACGCCCTTCATGTACTGCAGGCTATGTATCAGCAGCAACATTTCAATATGGAGGCACTGAAACCATGCTTTTCCATGATCCACCAGAATACTATAATCCTCCAGCCAGCCACCATCACCGTCCCTCATCGCCGAACTTTTCTCCTCCGGTACAGGGTACTGTCGCCGCCGGTGGGGACAAAGCGTGGGTGCCGACGCACTCTTCTCTTCGCCACCGCACGAAGGACGCGTGCTCTCTCTCTGTGTCCGAGGCCAGCATCCCTCTTCGTGCCGTCTGTTGCTCTCTGTCCGAGGTCACTTCCCCTCCTCCGTTGCCATCACTTCCCATTCCTCTGCCGCCGCCACTGACCTCGCTTCCCTTCTTCTCCGCGGCGGCCTACTCTCTTTTCTGCTTAACAGCTGCCTCCTCTTCTCCCCTCTGCCGCCTCCTCTCCACCGTTGAAGTTGAAGCTGAAGCATGGAGGGTCTGCGGCAAATATGGTGTCAACAGCACCGGTCTCTTTCTCAGCTTCTTTTCCTCCGATCAATTTCTTCCAAGATTTTTGTCAAAGAGCACGGCTGGTTTAGCATTTTCTACCACAAAAGAGAAATTAGCTGAAGCCTTTTCAGAATATGACAATGTCCTAAATGCTGATATAGTACTGAACAAAGCCAAGAACAGATCTAAGGGTTTTGGATATGTGACCTTTGCTAAGGAGGAAGAAGCCCGCAAGGCACAAATGGCTATGAATGGAAAGATATTGCATGGACGTGTTCTGTACGTGGATATGGAACCAAATAAGAAACCAGAAAAATCATCTTTTGACAAGGCAACTACTGATGTGGAGCCTCGAGTTGGGAACAAGTTCCGTATCGGTCGGAAAATTGGTAGCGGATCCTTTGGAGATATTTATCTTGGTAACAATATTCAGACAAATGAAGAGGTTGCAATTAAGTTTGTGAGTACTCTGATCAATCTTTTATTGACTCTGTTATGGTGTTGTGAAAATTGTTGGTTGGATTTAGATCTAATTGATTATTGA 1176 0.4685 MLLADDKIWDQNGFNDFVRKSLGPSVGAFDGNLKLGILPASIFCSGHTYTDIRPSCTAGYVSAATFQYGGTETMLFHDPPEYYNPPASHHHRPSSPNFSPPVQGTVAAGGDKAWVPTHSSLRHRTKDACSLSVSEASIPLRAVCCSLSEVTSPPPLPSLPIPLPPPLTSLPFFSAAAYSLFCLTAASSSPLCRLLSTVEVEAEAWRVCGKYGVNSTGLFLSFFSSDQFLPRFLSKSTAGLAFSTTKEKLAEAFSEYDNVLNADIVLNKAKNRSKGFGYVTFAKEEEARKAQMAMNGKILHGRVLYVDMEPNKKPEKSSFDKATTDVEPRVGNKFRIGRKIGSGSFGDIYLGNNIQTNEEVAIKFVSTLINLLLTLLWCCENCWLDLDLIDY 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g00880 391 SUPERFAMILY RNA-binding domain, RBD 239 314 IPR035979 GO:0003676
Adu04g00880 391 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 239 304 IPR000504 GO:0003723
Adu04g00880 391 SUPERFAMILY Protein kinase-like (PK-like) 325 367 IPR011009 -
Adu04g00880 391 Gene3D - 237 321 IPR012677 -
Adu04g00880 391 PANTHER TRANSFORMER-2-RELATED 238 311 - -
Adu04g00880 391 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 239 311 IPR000504 GO:0003723
Adu04g00880 391 ProSiteProfiles Protein kinase domain profile. 334 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Adu04g00880 391 PANTHER RNA RECOGNITION MOTIF 238 311 - -
Adu04g00880 391 ProSitePatterns Protein kinases ATP-binding region signature. 340 363 IPR017441 GO:0005524
Adu04g00880 391 Gene3D Phosphorylase Kinase; domain 1 322 369 - -
Adu04g00880 391 SMART rrm1_1 238 307 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g00880 Adu-Chr4 13855894 13863211 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g00880 243 317 Eukaryotic Initiation Factors Gene Family AT1G22760 38.667 2.06e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g00880 K20784 - ahf:112702689 140.198