Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g00837 ATGCTCGGCATATCACCGCAGTCAGTCCCAACTCTCGAACGTCTCCCCGGATCCCACGAGGAGGCGCTCACAATTGGTACTGACGTGCGCAGTCTTTTCACCGCCTCCAGCAGCACCCTGCTAGAGAGGGCGTTTGGGGCGCGAGAGATCACGCTCCTCAACCCAATTTGGATCCATTCCCGGAATTCCGGCAAGCCTTTTTATGGAATCTTGCACCGAATCGATGTTGGAATCGTCATCGATTTGGAGCCTGCTAGGACTGAGGACCCTGCACTGTCAATTGCAGGGGCTGTTCAGTCCCAGAAGCTAGCTGTTCGAGCTATTTCGCAGCTTCAGTCGCTTCCCGGAGGCGATGTGAAGATTCTTTGTGACACTGTTGTGGAGAGTGTGAGAGAATTGACCGGTTATGATAGGGTGATGGTGTACAAATTTCATGAGGATGAGCATGGTGAGGTTGTTGCCGAGAGTAAGAGGCCTGATTTGGAGCCTTATATTGGTTTGCATTACCCTGCTACTGATATACCTCAGGCTTCGAGGTTCTTGTTCAAGCAGAATAGAGTTAGGATGATTGTAGATTGCAATGCTTCGCCATTGAGGGTGGTGCAGGATGAGGCCCTTGTGCAACCCTTGTGTTTGGTTGGCTCCACCCTGCGCGCACCACACGGTTGCCACGCTCAGTATATGGCGAATATGGGGTCGATTGCTTCGTTGGTTATGGCTGTTATCATCAATGCTAATGATGAGGAGGCTGTTGGCGGCCGCAGCTCAATGAGGCTGTGGGGATTGGTTGTTTGCCACCACACTTCGGCCAGGTGTATACCTTTTCCCTTGAGGTATGCTTGTGAATTCTTGATGCAGGCCTTTGGGCTGCAGCTGAATATGGAGCTTCAATTGGCTTCGCAGTCATTGGAGAAGCGAGTTTTGAGGACGCAAACTCTGTTGTGTGACATGCTTCTTAGGGACTCGCCCACTGGCATTGTTACTCAGAGTCCTAGTATTATGGATTTGGTGCGGTGTGATGGAGCAGCTTTGTACTACCAAGGAAACTACTATCCATTGGGTGTAACACCTACTGAATCTCAAATAAGGGATATTATAGAGTGGTTGTTGGCATACCATGGAGATTCCACGGGTTTGAGTACTGATAGTCTGGGTGATGCTGGGTATCCTGGTGCTGCCTCGCTTGGGGATGCTGTTTGTGGGATGGCTGTTGCATATATCACTGAAGGGGATTTTCTTTTCTGGTTTAGGTCTCACACAGCAAAAGAGATCAAATGGGGTGGTGCAAAGCATCATCCTGAGGATAAGGATGATGGGCAGAGAATGCATCCTCGTTCTTCGTTTAAGGCATTTTTGGAAGTGGTGAAAAGCCGGAGTTTGCCATGGGATAATGCAGAAATGGATGCGATTCACTCTTTGCAGCTTATTCTGCGAGACTCATTTAGAGATGCCGAGCATAGCAACTCAAAGGCTGTCATGCATTCGCATCTGGCGGATTTTGAGTTGCAAGGGGTAGATGAGTTAAGTTCTGTGGCGAGAGAAATGGTCAGATTGATAGAAACTGCCACTGCTCCCATATTCGCTGTTGACGTTGATGGCCGCATAAATGGGTGGAATGCAAAGGTTGCAGAATTGACAGGGCTTCCAGTCGACGAGGCTATGGGGAAGTCACTGGTTCATGATCTTGTGTACAAGGAGTTCGAAGAAACTGTAGACAAGCTTCTCTCTCGCGCTCTAAGAGGTGAAGAAGATAAGAATGTTGAGATAAAATTGAAGACATTTGGCCCAGAAAATCAAAATGGTGCAGTTTTTGTAGTGGTGAATGCTTGCTCCAGCAAGGATTATACAAATAATATAGTTGGAGTATGCTTTGTTGGTCAGGACGTTACTGGTCAGAAGGTTGTAATGGACAAATTCATCAACATACAAGGTGACTACAAGGCTATTGTACATAGCCCAAATCCATTGATCCCCCCAATTTTTGCATCGGATGATAACACTTGTTGCTTAGAGTGGAATGCAGCCATGGAAAAGCTTACTGGTTGGGGGCGTGCAGATGTAATTGGAAAGATGTTGGTTGGAGAGGTTTTTGGTAGTTGCTGTCAGTTAAAGGGCTCGGATGCTTTAACAAAGTTCATGATTGTGTTGCACAATTCCCTTGGTGGACAAGATACCGACAAGTTCCCTTTTTCATTTCTTGACCGGCATGGAAAATATGTGCAAGCTTTCTTGACTGCAAATAAGAGGGTTAACATGGATGGTCAGATTATTGGAGCTTTTTGCTTTTTGCAAATTGCGAGTCCTGATCTTCAACAGGCTCTGAAAATACAGAAGCAACAAGAGAAGAATTGCTATGCTAGGATGAAAGAGTTAGCCTATATTTGTCAAGAAATAAAGAATCCACTGAGTGGCATACGCTTTACAAACTCTCTTTTGGAGGCTACTGGATTGACCGATGAACAAAAGCAGTTTCTTGAGACTAGTACTGCATGTGAGAAGCAAATGTCAAAAATAATACAGGATGTTGACTTGGCAAGCATTGAAGATGGATCAATGGAGCTTGAAAAGGGAGAATTCTTGCTTGGAAACGTCATCAATGCTGTTGTTAGCCAAGTAATGTTATTACTAAGAGAGAGAAATTTACAGTTGATTCGTGATATACCTGAAGAAATCAAGACGTTGGCTGTTTATGGTGATCAGTTGAGGATTCAACAAGTCTTGGCTGATTTCTTATTGAATATGGTGCGCTATGCGCCTTCTCCAGATGGGTGGGTAGAGATTCATGTACATCCAAGAATAAAACAAATCTCCGACGGGCTTACTCTTCTCCGTGCTGAATTTAGGATGGTATGTCCTGGTGAAGGTGTTCCTCCTGAATTGGTTCAAGACATGTTCCATAGCAGTCGTTGGGTGACTCAAGAAGGCTTAGGTCTGAGCATGAGCCGGAAGATTCTAAAGTTAATGAATGGTGAAGTCCAATATATCAGGGAGGCAGAAAGATGCTATTTCTTCGTTCTTCTTGAACTACCTGTAACACGGAGAACTTACTCTAAAATCGTTAACTAG 3066 0.455 MLGISPQSVPTLERLPGSHEEALTIGTDVRSLFTASSSTLLERAFGAREITLLNPIWIHSRNSGKPFYGILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDVKILCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRPDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCNASPLRVVQDEALVQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIINANDEEAVGGRSSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQSLEKRVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVRCDGAALYYQGNYYPLGVTPTESQIRDIIEWLLAYHGDSTGLSTDSLGDAGYPGAASLGDAVCGMAVAYITEGDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWDNAEMDAIHSLQLILRDSFRDAEHSNSKAVMHSHLADFELQGVDELSSVAREMVRLIETATAPIFAVDVDGRINGWNAKVAELTGLPVDEAMGKSLVHDLVYKEFEETVDKLLSRALRGEEDKNVEIKLKTFGPENQNGAVFVVVNACSSKDYTNNIVGVCFVGQDVTGQKVVMDKFINIQGDYKAIVHSPNPLIPPIFASDDNTCCLEWNAAMEKLTGWGRADVIGKMLVGEVFGSCCQLKGSDALTKFMIVLHNSLGGQDTDKFPFSFLDRHGKYVQAFLTANKRVNMDGQIIGAFCFLQIASPDLQQALKIQKQQEKNCYARMKELAYICQEIKNPLSGIRFTNSLLEATGLTDEQKQFLETSTACEKQMSKIIQDVDLASIEDGSMELEKGEFLLGNVINAVVSQVMLLLRERNLQLIRDIPEEIKTLAVYGDQLRIQQVLADFLLNMVRYAPSPDGWVEIHVHPRIKQISDGLTLLRAEFRMVCPGEGVPPELVQDMFHSSRWVTQEGLGLSMSRKILKLMNGEVQYIREAERCYFFVLLELPVTRRTYSKIVN 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g00837 1021 SMART gaf_1 118 306 IPR003018 GO:0005515
Adu04g00837 1021 Pfam His Kinase A (phospho-acceptor) domain 790 850 IPR003661 GO:0000155|GO:0007165
Adu04g00837 1021 CDD PAS 656 764 IPR000014 -
Adu04g00837 1021 Pfam Phytochrome region 309 482 IPR013515 GO:0006355|GO:0009584
Adu04g00837 1021 Gene3D - 767 849 - -
Adu04g00837 1021 Pfam PAS fold 2 85 IPR013654 GO:0006355
Adu04g00837 1021 ProSiteProfiles Histidine kinase domain profile. 793 1013 IPR005467 -
Adu04g00837 1021 SUPERFAMILY PYP-like sensor domain (PAS domain) 518 626 IPR035965 -
Adu04g00837 1021 Pfam PAS fold 514 629 IPR013767 GO:0006355
Adu04g00837 1021 Pfam PAS fold 645 764 IPR013767 GO:0006355
Adu04g00837 1021 PANTHER PHYTOCHROME 1 1014 - -
Adu04g00837 1021 SUPERFAMILY GAF domain-like 304 481 - -
Adu04g00837 1021 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 1014 - -
Adu04g00837 1021 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 777 848 IPR036097 GO:0000155|GO:0007165
Adu04g00837 1021 ProSiteProfiles PAS repeat profile. 511 582 IPR000014 -
Adu04g00837 1021 SUPERFAMILY PYP-like sensor domain (PAS domain) 19 86 IPR035965 -
Adu04g00837 1021 ProSitePatterns Phytochrome chromophore attachment site signature. 218 227 IPR013516 -
Adu04g00837 1021 Gene3D PAS domain 658 766 - -
Adu04g00837 1021 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 898 1005 IPR003594 -
Adu04g00837 1021 Gene3D PAS domain 506 639 - -
Adu04g00837 1021 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 118 286 IPR016132 -
Adu04g00837 1021 Gene3D - 301 474 IPR043150 -
Adu04g00837 1021 Gene3D PAS domain 22 221 - -
Adu04g00837 1021 SUPERFAMILY PYP-like sensor domain (PAS domain) 659 762 IPR035965 -
Adu04g00837 1021 SMART pas_2 644 714 IPR000014 -
Adu04g00837 1021 SMART pas_2 513 580 IPR000014 -
Adu04g00837 1021 SUPERFAMILY GAF domain-like 98 293 - -
Adu04g00837 1021 CDD HATPase_Phy-like 897 1009 IPR044767 -
Adu04g00837 1021 Gene3D - 99 457 IPR029016 -
Adu04g00837 1021 ProSiteProfiles PAS repeat profile. 645 697 IPR000014 -
Adu04g00837 1021 Gene3D - 850 1015 IPR036890 -
Adu04g00837 1021 Pfam GAF domain 120 296 IPR003018 GO:0005515
Adu04g00837 1021 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 861 1009 IPR036890 -
Adu04g00837 1021 CDD PAS 522 629 IPR000014 -
Adu04g00837 1021 CDD HisKA 786 846 IPR003661 GO:0000155|GO:0007165
Adu04g00837 1021 PRINTS Phytochrome signature 218 239 IPR001294 GO:0006355|GO:0009584
Adu04g00837 1021 PRINTS Phytochrome signature 133 152 IPR001294 GO:0006355|GO:0009584
Adu04g00837 1021 PRINTS Phytochrome signature 533 548 IPR001294 GO:0006355|GO:0009584
Adu04g00837 1021 PRINTS Phytochrome signature 607 624 IPR001294 GO:0006355|GO:0009584
Adu04g00837 1021 PRINTS Phytochrome signature 411 430 IPR001294 GO:0006355|GO:0009584
Adu04g00837 1021 PRINTS Phytochrome signature 514 530 IPR001294 GO:0006355|GO:0009584
Adu04g00837 1021 PRINTS Phytochrome signature 33 55 IPR001294 GO:0006355|GO:0009584
Adu04g00837 1021 PRINTS Phytochrome signature 326 346 IPR001294 GO:0006355|GO:0009584
Adu04g00837 1021 PRINTS Phytochrome signature 627 647 IPR001294 GO:0006355|GO:0009584
Adu04g00837 1021 PRINTS Phytochrome signature 444 462 IPR001294 GO:0006355|GO:0009584
Adu04g00837 1021 TIGRFAM sensory_box: PAS domain S-box protein 518 633 IPR000014 -
Adu04g00837 1021 SMART HisKA_10 786 850 IPR003661 GO:0000155|GO:0007165
Adu04g00837 1021 SMART HKATPase_4 898 1013 IPR003594 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g00837 Adu-Chr4 12467171 12472820 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g00837 1 1011 Histidine Kinase Gene Family AT4G16250 76.840 0.0 1642
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g00837 K12121 - gmx:100799831 1862.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu04g00837 04 12467171 12472820 Adu04g00837 04 12467171 12472820 ECH