LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu04g00826	ATGGAAGAAAAAAATACACCACCACTTCTTCCACCTCTACCATCACCGCCACAAATTTTTTCACCGCCATCACCACCATTTTCATTGTCTATACCCACTACTACTATCAATGATCTCAGCTTTCTCAATGATGATACGTTTTTTGAAAAGCCACTTATTGATTTAGTAAAAGAAGGAGACTTTGGTCCTTCTTTGTATGAGTGGTTAGGCATCGCCCATGAGGATGCTCCACCAGTTAAAAGACCAGTAAAGCATCCTCTTTGTTCTTTTCCTCCGGCCGCAATTGTTCTAGAATCTTCTAAAACAGTTGAACAATCACAAAACTCATCCTTTTCCTTAATCGCATCCAATCTTGACGTCGCTGTTGGTAACAACAATAATTGCAATAGAGTTTCCGGGATTAAACGTCCAGCAAAATCTGTTGTCGGTGACGGTGGAAATCAAAGTCTGAGAAGTGATGATGAACCTGGTGATGAAAAAATTAATATTATAACTAGGCTGAAACTGAGCCCATCTACAATGACATCGATTGCAGCTACCATGAAGATAAATAGAAGGAGCGAAAATAATCTTCCAAAACTTGCTTTCTTGACGGAGAGTGAATCAGACAACCTTGAAGATGGTTATAGATGGCGCAAGTACGGTCGAAAAACCGTGAGAAACAGCCCTTATCCAAGGAACTACTATCGTTGCACAACAATTGGTTGCAATGTGAAGAAGAGAGTAGAGCGGTGGTTAGATGATCCCACCCATATATTAACCACCTATGAGGGTCTACACCTTCATGCTTTGCCACCGATCCCCCCTACTCCTTTTAAGTCCTTCAGCCTCTACAAAAACTGTACCACTGGCCCCAAACCTGACGGAGGCAGCTGTAGCTGTCGATGTAAAGGTGCAGTCACAGTTGCAGGTGCAGGTGCAGATGCAGGGGAACAAAATCGTGCTAATAACGCTATTACTAGTGTTCATCTTAGAACTGTCAGTGGTGGTAGCGGTGTTAATGACGGTGGCTCGCAGCGCATTGTGGCAGGTGAAAATGAATTTAATTATAACAAACACATGCAGAATGTAGAAAAAGCAATTACACCAATACTGTTACAGAACTTCAAGTTAATTGCTCCACAGACTTTCTTGAATAATGCTACTCCCATGACTGTTACTAATAATGGTCATTACCAATCATCACTGATGAGTAGTGTTCATCATGGTAACAATCATCGTCAAGATTGTTTTGGTGCTGGATCTTCAAATGGTGGTGCCGAGGATTCGTTTAGGAAGAAGAGCACTGGTACCGGGCTGCTTGAAGATATTGTTAATTTCTCATGA	1326	0.4178	MEEKNTPPLLPPLPSPPQIFSPPSPPFSLSIPTTTINDLSFLNDDTFFEKPLIDLVKEGDFGPSLYEWLGIAHEDAPPVKRPVKHPLCSFPPAAIVLESSKTVEQSQNSSFSLIASNLDVAVGNNNNCNRVSGIKRPAKSVVGDGGNQSLRSDDEPGDEKINIITRLKLSPSTMTSIAATMKINRRSENNLPKLAFLTESESDNLEDGYRWRKYGRKTVRNSPYPRNYYRCTTIGCNVKKRVERWLDDPTHILTTYEGLHLHALPPIPPTPFKSFSLYKNCTTGPKPDGGSCSCRCKGAVTVAGAGADAGEQNRANNAITSVHLRTVSGGSGVNDGGSQRIVAGENEFNYNKHMQNVEKAITPILLQNFKLIAPQTFLNNATPMTVTNNGHYQSSLMSSVHHGNNHRQDCFGAGSSNGGAEDSFRKKSTGTGLLEDIVNFS	441

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu04g00826	441	MobiDBLite	consensus disorder prediction	1	24	-	-
	Adu04g00826	441	Pfam	WRKY DNA -binding domain	206	262	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Adu04g00826	441	SMART	WRKY_cls	205	264	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Adu04g00826	441	Gene3D	WRKY domain	191	266	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Adu04g00826	441	ProSiteProfiles	WRKY domain profile.	200	265	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Adu04g00826	441	PANTHER	WRKY TRANSCRIPTION FACTOR 48-RELATED	147	274	-	-
	Adu04g00826	441	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	147	274	IPR044810	GO:0003700
	Adu04g00826	441	MobiDBLite	consensus disorder prediction	7	24	-	-
	Adu04g00826	441	SUPERFAMILY	WRKY DNA-binding domain	198	265	IPR036576	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu04g00826	Adu-Chr4	12059974	12061733	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu04g00826	193	268	WRKY Transcription Factor Family	AT5G49520	68.421	1.64e-32	125

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Adu04g00826		WRKY	9.7e-22	CL0274