Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g00680 ATGAGGAATTCCCGCGTGGAACTTGGGAGGCCTGCCTCAGATCCTAAATGGGCGTCAGCCAATATTGGAGTATTTGTTTGCTTAAAATGTTGTGGTGTGCACAGAAGCCTTGGTTCTCATATATCAAAGATTTTATCTGTGACTTTGGATGAATGGACAGAAGAAGAAATTGATTCAATGATTGAAGTTGGGGGGAATGCTGCTGCTAATTCAATATATGAGGCTTATATTCCAGAAGGACATAAAAAACCTGAACCAGATGCCAGCCATGAACAGCGTGCAAATTTTATAGTGTCAAAATATGAGAATCAAGAATTTTTGAAACCTGGCTTGCGCATTGTGTCTGGGAAAGGCGGTCCAAATTCAAACTCCGCAAAAAGTCGCATCGATGGTGGTAGTTCAAAGAGAACGGAAGGTATGGTGGAATTTATTGGAATGTTGAAGGTGAAAGTGATTAGAGGCACCAATTTAGCTATTAGAGATATAAAGACAAGTGATCCATATGTTGTTTTGAACCTTGGCACACAGACTTCCCAGACAAGGGTAATATCGAGTAACTTGAATCCAGTCTGGAATGAAGAAATTATGTTGTCCGTTCCTGAAATATATGGACCAATAAAACTGAAAGTGTTCGATTATGACACATTTTCTGCTGACGACATAATGGGAGAAGCAGACATTGACATTCAGCCCCTGATATCATCTGCCATGGCATGTGGTAATGCTGCAATGTTTGCCAATATGCAGATAGGGAAGTGGTTAAAAGCTGATGGGAATGCACTTATTGAAGATAGTATAGTCAATATTGTTGATGGGAAGGTTATACAGGCCATGACACTGAAGCTCCAGAATGTTGAATGTGGAGAAATAGACCTAGAAATTGAGTGGATTCCTCTTGATCAATAG 906 0.4018 MRNSRVELGRPASDPKWASANIGVFVCLKCCGVHRSLGSHISKILSVTLDEWTEEEIDSMIEVGGNAAANSIYEAYIPEGHKKPEPDASHEQRANFIVSKYENQEFLKPGLRIVSGKGGPNSNSAKSRIDGGSSKRTEGMVEFIGMLKVKVIRGTNLAIRDIKTSDPYVVLNLGTQTSQTRVISSNLNPVWNEEIMLSVPEIYGPIKLKVFDYDTFSADDIMGEADIDIQPLISSAMACGNAAMFANMQIGKWLKADGNALIEDSIVNIVDGKVIQAMTLKLQNVECGEIDLEIEWIPLDQ 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g00680 301 SUPERFAMILY ArfGap/RecO-like zinc finger 12 108 IPR037278 -
Adu04g00680 301 CDD ArfGap 12 101 - -
Adu04g00680 301 Pfam C2 domain 146 238 IPR000008 -
Adu04g00680 301 MobiDBLite consensus disorder prediction 111 134 - -
Adu04g00680 301 SMART C2_3c 146 241 IPR000008 -
Adu04g00680 301 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 143 299 IPR035892 -
Adu04g00680 301 Gene3D Arf GTPase activating protein 9 111 IPR038508 -
Adu04g00680 301 Gene3D C2 domain 143 301 IPR035892 -
Adu04g00680 301 Pfam Putative GTPase activating protein for Arf 12 108 IPR001164 GO:0005096
Adu04g00680 301 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 11 301 IPR044518 GO:0005096|GO:0005543
Adu04g00680 301 CDD C2_ArfGAP 144 288 - -
Adu04g00680 301 ProSiteProfiles C2 domain profile. 130 242 IPR000008 -
Adu04g00680 301 PRINTS HIV Rev interacting protein signature 4 23 IPR001164 GO:0005096
Adu04g00680 301 PRINTS HIV Rev interacting protein signature 23 40 IPR001164 GO:0005096
Adu04g00680 301 PRINTS HIV Rev interacting protein signature 44 65 IPR001164 GO:0005096
Adu04g00680 301 SMART arf_gap_3 2 114 IPR001164 GO:0005096
Adu04g00680 301 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 11 301 - -
Adu04g00680 301 ProSiteProfiles ARF GTPase-activating proteins domain profile. 1 106 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g00680 Adu-Chr4 9027060 9030748 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g00680 12 301 C2H2 Transcription Factor Family AT4G05330 69.536 1.02e-154 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g00680 K12486 - gmx:100810806 457.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu04g00680 04 9027060 9030748 Adu04g00680 04 9027060 9030748 ECH