Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g00672 ATGAAGAAGCCTCCCGTTTCGCTTGATCTGCCGCCACCAAACCTAACGGCCACGGCCGAGGAAACTACAAGATGCAATAGTGCCAACCGTCCTCGCAAACTCGTCATCAAGTGCGGAGACAGGATGATCGGCTGCACTACTAATAAGGATGCCATCACAGCTGCAAACACTACCGGCCATGATCCTGGCACAGAGCTGCCGCTGGAACCAACTGTGAATCCGAAGAGGAGAAAGAAGAATAATGCAGAGGCAAAGGGATACCAGAGTCACACTCCATGGATACCACCTTCTCTGCCACCGACATTATTGCATGATCTCGCCGTGACGAGAGAGGAGCTCATGCATGATTTCAAGACTTCATCCGACAAAATCAGACGACAAGGAAATTTCAGCAGGGAAGATAATCACAAACTGCTTGAACCAAGACCACCATTGGTGATAGCGGCGGTTGCGGAACGCAGTCCAAATGGATTGAAGATCAATGAGAGCATAAGTGACGACACTCCAGAAACCGTTTGGAAAGGTAGAACAAGAAGCAGGAGTTGCAACAAGAAAGAGAGACTGCCATTTAGGTTCGCGCTGACGGAATCGGAGATTGAGGAAGATTTCATGAAGATGAGAATGGATGAAAACCGGTCACCGCGGAAGCAGAAAAAGCAGCCCAGAAATCTGCAGAAACAATTGGATGATCTTGTTCCTGGTTTTCGTTTAACAGAAATTAAAGCAAATTTATACAAGGGTCATGGCGAGAGATTAGAACTGATCTTGGTGGGAGTGATAAAAGAGGGTTGGGAGGATGATGCCGAGAGCTTAGGCTTCTTGGATAGTTGGGAAACGGAGCAGACGCGGTTGAGGAAAAAGATGACTTCCACCCATGACGTTACAGATAATGAAGCTGGTGAGAAAGAGCAGTCAGAATCACAGATGCAATCTTTATCTGCAAATGGAATTTCTGATCCAGGTGCTGGTATGCAGAATAATCAGTATGTAACACCTGCACCACTTGGAACTGGGTATGCTATGGCGCCCCCTCCTTATCCATATCCAGATCCTTACTACAGAAGCGTGTTTGCTCCGAATGATACACAGCCATATCCCCCGCAGCCATATGGTGGACATCCAATGGCCCATATTCAGTTAATGGGAATTCAGCAAGCTGGTGTTCCTTTGCCGACTAATGCAATTGAGGAGCCTGTGTTTGTAAATGCAAAGCAGTATCACGGTATCTTAAGACGTAGGCAATCCCGTGCTAAAGCTGAATCCGAAAATAAGGCTATCAGGAATCGCAAGCCATACCTGCATGAATCTCGACATCAGCATGCACTTCGACGAGCAAGAGGATGTGGAGGTCGATTTCTGAACTCAAAGAAAGATGAGAATCAACAGGATGAGCTGTCACCTGCTGACAAATCACACTCAAACGACAATCACAATCCTGACAAAAACAATCTTGCACCATCAGATAGAGCATCCTAA 1476 0.4675 MKKPPVSLDLPPPNLTATAEETTRCNSANRPRKLVIKCGDRMIGCTTNKDAITAANTTGHDPGTELPLEPTVNPKRRKKNNAEAKGYQSHTPWIPPSLPPTLLHDLAVTREELMHDFKTSSDKIRRQGNFSREDNHKLLEPRPPLVIAAVAERSPNGLKINESISDDTPETVWKGRTRSRSCNKKERLPFRFALTESEIEEDFMKMRMDENRSPRKQKKQPRNLQKQLDDLVPGFRLTEIKANLYKGHGERLELILVGVIKEGWEDDAESLGFLDSWETEQTRLRKKMTSTHDVTDNEAGEKEQSESQMQSLSANGISDPGAGMQNNQYVTPAPLGTGYAMAPPPYPYPDPYYRSVFAPNDTQPYPPQPYGGHPMAHIQLMGIQQAGVPLPTNAIEEPVFVNAKQYHGILRRRQSRAKAESENKAIRNRKPYLHESRHQHALRRARGCGGRFLNSKKDENQQDELSPADKSHSNDNHNPDKNNLAPSDRAS 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g00672 491 MobiDBLite consensus disorder prediction 304 329 - -
Adu04g00672 491 Pfam Protein of unknown function (DUF1639) 194 245 IPR012438 -
Adu04g00672 491 ProSitePatterns NF-YA/HAP2 subunit signature. 400 420 IPR018362 GO:0003677|GO:0016602
Adu04g00672 491 PRINTS CCAAT-binding transcription factor subunit B signature 429 452 IPR001289 GO:0003700|GO:0006355
Adu04g00672 491 PRINTS CCAAT-binding transcription factor subunit B signature 398 420 IPR001289 GO:0003700|GO:0006355
Adu04g00672 491 Gene3D - 395 456 - -
Adu04g00672 491 MobiDBLite consensus disorder prediction 285 303 - -
Adu04g00672 491 MobiDBLite consensus disorder prediction 285 329 - -
Adu04g00672 491 SMART cbf3 394 455 IPR001289 GO:0003700|GO:0006355
Adu04g00672 491 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 397 452 IPR001289 GO:0003700|GO:0006355
Adu04g00672 491 MobiDBLite consensus disorder prediction 413 432 - -
Adu04g00672 491 MobiDBLite consensus disorder prediction 413 491 - -
Adu04g00672 491 MobiDBLite consensus disorder prediction 207 225 - -
Adu04g00672 491 ProSiteProfiles NF-YA/HAP2 family profile. 395 455 IPR001289 GO:0003700|GO:0006355
Adu04g00672 491 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 288 473 - -
Adu04g00672 491 MobiDBLite consensus disorder prediction 56 96 - -
Adu04g00672 491 MobiDBLite consensus disorder prediction 1 27 - -
Adu04g00672 491 MobiDBLite consensus disorder prediction 451 477 - -
Adu04g00672 491 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 288 473 IPR001289 GO:0003700|GO:0006355
Adu04g00672 491 MobiDBLite consensus disorder prediction 207 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g00672 Adu-Chr4 8880971 8888027 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g00672 289 471 CCAAT-HAP2 Transcription Factor Family AT1G30500 53.968 1.30e-60 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Adu04g00672 CBFB_NFYA 2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g00672 K08064 - ahf:112796168 360.918