Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g00648 ATGGAGGATTCCGAGGGAGTCCTCAGCTTCGATTTCGAGGGCGGCCTCGACGCTGCTCCCCCCGCTGCCGCCGCCGTCTCCGCACCCTCCGCCGGACTTCTCTCCAATCAAAACGATTCAACCGCGGCGGCCGCTGCAGCCGCGGTTCCCAATGGCGCTGCCGCAGCTGCGCCCACTGCTGGAGACCCCGGAGCTGCCGGAAATGTGCCCGGGAGGCGGAGCTTCCGGCAGACGGTGTGCCGGCACTGGCTAAGGAGCTTGTGTATGAAGGGAGACGCGTGCGGGTTCTTGCATCAGTACGACAAGGCGAGGATGCCGGTGTGCCGGTTCTTTCGGCTGTACGGTGAGTGCCGCGAGCAGGATTGCGTGTACAAGCACACCAACGAAGATATCAAGGAGTGTAACATGTACAAGTTAGGATTTTGTCCTAATGGACCTGATTGCCGATACAGACATGCTAAATCTGCTGGACCTCCACCTTCTGTTGATGAGGTCCTTCAAAAGATCCAGCATTTATATTCTTACAACTACAATGCATCGAACAAGTTTTTCCAACAAAGGGGTTCAAACTATAATCAACAAGCTGAAAAATCTCAATTTCCTCAAGGAAATAATTCTACAAACCAAGCTGTTGCTGGAAAACCATTACAAGCAGAGTCGGGTAATGTCCAGCAGCAACAAGTTCAACAGGCTCAGCAGCCAGTCAATCAAAGCCAAGTGCAAAATGTTGCTAGTGGTCAGCCCAATCAGGCGAATAAAACTGCAACTCCTTTACCTCAAGGAATATCTAGGTATTTTATTGTTAAAAGTTGCAATCGTGAAAATTTGGAGTTATCAGTACAACAAGGAGTATGGGCAACACAAAGGAGCAACGAGTCAAAACTAAACGAGGCTTTTGATTCTGTGGAAAATGTTATACTGATTTTCTCAGTCAACCGAACTCGCCATTTCCAGGGTTGTGCAAAGATGACCTCCAGAATTGGTGGTTCTGTTGCTGGGGGAAACTGGAAATATGCTCATGGAACTGCACATTATGGGCGGAATTTCTCTGTTAAATGGTTGAAGTTATGTGAACTGTCATTCCACAAAACTCGCCATTTGAGGAATCCATACAATTGGAGTTACGATAGAGATTGTCAGGAGCTGGAACCCTCCATCGGTGAGCAGTTGGCATCCTTGCTTTATCTTGAGCCAGATAGTGAGCTTATGGCTATCTCAATTGCAGCAGAGTCTAAACGAGAAGAAGAGAAGGCAAAGGGAGTGAATCCAGACAATGGAGGAGAGAATCCGGATATCGTCCCATTTGAAGACAACGAAGAAGAGGAAGAGGAAGAAAGTGATGAAGAGGAGGAGAGCTTTGGTCATGTTGTTGGGCCAGCTGTTCAAGGCAGAGGTAGGGGCAGAGGCATGATGTGGCCGCCTCACATGCCTCTTGCACGCGGAGCCAGACCTATGCCTGGAATGCCAGGTTTTAACCCAGTAATGATGGGTGATGGATTATCATATGGGCCTGTTGGACCTGATGGCTTCGGTATGCCCGATCTTTTTGGTGTGGGCCCTCGTGGTTTTCCTCCATATGGTCCTAGGTTCTCTGGTGATTTTGCAGGACCCCCTGCAGCCATGATGTTCCGTGGGCGACCTTCCCAACCTGGGATGTTTCCAGGTGGTGGATTTGGGATGATGATGAATCCTGCACGTCCTCCCTTTATGGGGGGGATGGGCGCAAATCCTCCAAGAGCCAGTAGGCCAGTTAATATGCCTCCGATGTTTCCACCGCCACCACCTCCACCTCAAAATCACAACCGACTTGTAAAGAGGGATCAAAGAATTAATGATCGGAATGATAAATTTGGTTCAGGATTAGAGCAGGGCAAGAATCAGGATATGATGAGTCAAAGTGGTGGACCTGATGAAGACATGCAAGGATACAAAGCACAGCAGGATGATCAGTATGCTGTCAACACCTTCAGGAACGATGATAGTGAAAGCGAGGATGAGGCACCTCGGCGGTCAAGGCATGGAGAGGGGAAAAAGAGAAGGCGAAGCTTAGAAGATGCCAATGCAAGCTCTAATCACTAG 2079 0.4945 MEDSEGVLSFDFEGGLDAAPPAAAAVSAPSAGLLSNQNDSTAAAAAAAVPNGAAAAAPTAGDPGAAGNVPGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKSAGPPPSVDEVLQKIQHLYSYNYNASNKFFQQRGSNYNQQAEKSQFPQGNNSTNQAVAGKPLQAESGNVQQQQVQQAQQPVNQSQVQNVASGQPNQANKTATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSVENVILIFSVNRTRHFQGCAKMTSRIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNWSYDRDCQELEPSIGEQLASLLYLEPDSELMAISIAAESKREEEKAKGVNPDNGGENPDIVPFEDNEEEEEEESDEEEESFGHVVGPAVQGRGRGRGMMWPPHMPLARGARPMPGMPGFNPVMMGDGLSYGPVGPDGFGMPDLFGVGPRGFPPYGPRFSGDFAGPPAAMMFRGRPSQPGMFPGGGFGMMMNPARPPFMGGMGANPPRASRPVNMPPMFPPPPPPPQNHNRLVKRDQRINDRNDKFGSGLEQGKNQDMMSQSGGPDEDMQGYKAQQDDQYAVNTFRNDDSESEDEAPRRSRHGEGKKRRRSLEDANASSNH 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g00648 692 MobiDBLite consensus disorder prediction 411 467 - -
Adu04g00648 692 MobiDBLite consensus disorder prediction 433 451 - -
Adu04g00648 692 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 1 684 IPR045168 -
Adu04g00648 692 MobiDBLite consensus disorder prediction 620 634 - -
Adu04g00648 692 Gene3D - 70 133 - -
Adu04g00648 692 SMART c3hfinal6 130 154 IPR000571 GO:0046872
Adu04g00648 692 SMART c3hfinal6 74 100 IPR000571 GO:0046872
Adu04g00648 692 SMART c3hfinal6 102 128 IPR000571 GO:0046872
Adu04g00648 692 MobiDBLite consensus disorder prediction 602 619 - -
Adu04g00648 692 MobiDBLite consensus disorder prediction 218 256 - -
Adu04g00648 692 ProSiteProfiles YTH domain profile. 263 394 IPR007275 GO:0003723
Adu04g00648 692 MobiDBLite consensus disorder prediction 581 600 - -
Adu04g00648 692 MobiDBLite consensus disorder prediction 571 692 - -
Adu04g00648 692 ProSiteProfiles Zinc finger C3H1-type profile. 74 101 IPR000571 GO:0046872
Adu04g00648 692 SUPERFAMILY CCCH zinc finger 74 105 IPR036855 GO:0046872
Adu04g00648 692 Gene3D ph1033 like domains 220 398 - -
Adu04g00648 692 MobiDBLite consensus disorder prediction 658 686 - -
Adu04g00648 692 Pfam YT521-B-like domain 263 325 IPR007275 GO:0003723
Adu04g00648 692 Pfam YT521-B-like domain 342 393 IPR007275 GO:0003723
Adu04g00648 692 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45 1 684 - -
Adu04g00648 692 ProSiteProfiles Zinc finger C3H1-type profile. 128 155 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g00648 Adu-Chr4 8176268 8183158 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Adu04g00648 YTH 8.6e-38 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g00648 K14404 - gmx:100802826 1079.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu04g00648 04 8176268 8183158 Adu04g00648 04 8176268 8183158 ECH