Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g00563 ATGGGAAGAAGAAACGGGGGAAGGTCACTGCATGGAACCCTCCGCCGCCGGCTGGAGTCGTGCATGTCCAGTCACTCCACTGTCGATGATATCGTTAACCACCTCCGCTCCACTTACCCCGATTACCAACGCACCAAGCACCAAGCCCTCACTCGATTAGTTCAACAAGTCCTCGAGCCACGTTCCAAACACGCGACCAAAGTCTCTGCCAAGCGCAGCGGCCACGATGGCGACGAAGAAAGTGGTCGACGCGCGCTCCGAAAGAGACAGAAGAGAGTCGACGAAGGTGAAGAGAGGTTGCAGGGCGACAAAGAAACTCAGGGTTCTGCATCTTCCTCCTCTGCTTCAAGCTTGAGCGCGTCTGGGAGCAGCGGCAGTGAGGATGATGATGGCAGCACAGTGTCTGTTTCGACATCGGAGGACGCAAAATACCGGGAGAAGTACGAACCTGCTGTCGATTTGATGAAGATGATGCTGCGGAAAGCGTATACTCCTACGAAGGATGATAGTGCGAGGAAGATGAAACACGTCGTGCAAGATAAGAACGTTGAAATGGAGGTCGCCAATAGTGACAAGGCTACTAATGAGATTTGCGCTAAGAATGGAGGCGGAGGCAAAGTGAAGGCGGCGTCGAATTTGAAGGGTTCCGTTTCAAATGGCGACCATGGTGGTGGCAGCTTTGTTAAGCTGAAGGCAGGACCTAGGTTAAGTGATTTGGGTGGGATGAATGATCTTCTGGAAAAGCTGGTGGAAGAAGTGATTGTTCCATGGTATTATCCTGAGCTTCCAAGAAAGCTATGTCGTACTCCTACTACTGGAATCTTGCTGCATGGGCCACCCGGTTGTGGCAAGACCACACTGGCTCACGCCATAGCTAATGAGACCCGTGTTCCCTTCTATCCGATATCAGCTACTGAGTTGGTTTCTGGAGTATCGGGTGCATCTGAAGAGAATATCAGAGAGCTTTTCGCTAAAGCATATAGGACTGCCCCATCAATTGTCTTCATTGATGAGATTGATTCAATTGCTTCGAAAAGAGACAATTTACAGCGAGAGATGGAGAAAAGAATTGTAACACAGTTACTTGCCAGCATGGATCAATCAAGTAGGCATATGCAATCCGCTAATGGTTTGGACAGTTCTAATGTTCATCCCAGTTATGTTCTTGTAATTGGAGCTACAAATAGGCCTGATGCTCTTGACTCGGCCTTGAGAAGGCCTGGGCGGTCTACACCAGGATATGTCGGTGCTGATTTGGCAGCCTTGATTACGGGGGCGTGTAATTTGGCCTTGAAGAGAATTATTTCCAAAAGGAGAGGGGAACATGAGACAAGTTATCTTGGAGACTGGTGGGGCGAACCTTGGCCTCTTGAAGATATGGATAAGCTTGTCTACACAATGTCTGATTTCCAGGAAGCTTTGAAAATTGTACAACCTTCATTAAGAAGAGAGGGCTTCTCATCCATTCCTGATGAGAAATGGGAAGATGTTGGCGGCCTTGATTATTTAAGGAAGGAGTTTAAAAATAGAATAATAAGGCCGATAAAATATCCTGAGGTTCATCAGGCATCTAGGTTTGCAAATCAGACGGGAATTTTACTTTTTGGGCCCCCTGGTTGTGGTAAAACCCTTATTGCCAAAGCTGTTGCCAATGAGGCAGGAGCTAATTTCATTTATATTAAGGGGCCTGAGCTCTTAAATAAATTTGTTGGAGAAAGTGAGAGAGAAATTCGACTAACGTTTAGTCGTGCAAGGGCATGTTCACCCTGTATATTATTTTTTGATGAGGTGGATGCTTTGTCAACCAAACGTGGTGCAGAAGGTGGATCAGGCATTGAGCGAGTAGTGAATCAGTTACTAATTGAGCTAGATGGTGCGGGGCAACGCCAAAATGTTTTTGTCATTGGTGCAACAAATAGGCCTGATAGGATGGATGAGGCTCTCCTCCGTCCTGGTAGACTTGGTAAACAACTTTACGTTCCTCTGCCAAGCACTGACCAGCGGTTTTCAATATTGAAAGCTCTTGCAAGGAAGCAGCCTGTTGATCCTACTGTGGATCTGAGAGCCATAGCTGAAGCGTGTGAAAATTTTAGTGGCGCTGACCTTGCTGAATTGGTGGATGAAGCAACTCGTGCTGCTCTTGATGAGAAATATACCGCAGTTGAAGAAGCTTTGACCTCAGTTGAAGCCTCTAGTGATACTTATACTTGCAAGCCAAGACATTTTGATATAGCACTTAGTCAGGTCTTTCCCTCTGTTTCTCCGGCGAAAAGGCGTAGGTATGAGCGCTTGGCAAAGCATTTTAAAGCATCATGA 2316 0.4698 MGRRNGGRSLHGTLRRRLESCMSSHSTVDDIVNHLRSTYPDYQRTKHQALTRLVQQVLEPRSKHATKVSAKRSGHDGDEESGRRALRKRQKRVDEGEERLQGDKETQGSASSSSASSLSASGSSGSEDDDGSTVSVSTSEDAKYREKYEPAVDLMKMMLRKAYTPTKDDSARKMKHVVQDKNVEMEVANSDKATNEICAKNGGGGKVKAASNLKGSVSNGDHGGGSFVKLKAGPRLSDLGGMNDLLEKLVEEVIVPWYYPELPRKLCRTPTTGILLHGPPGCGKTTLAHAIANETRVPFYPISATELVSGVSGASEENIRELFAKAYRTAPSIVFIDEIDSIASKRDNLQREMEKRIVTQLLASMDQSSRHMQSANGLDSSNVHPSYVLVIGATNRPDALDSALRRPGRSTPGYVGADLAALITGACNLALKRIISKRRGEHETSYLGDWWGEPWPLEDMDKLVYTMSDFQEALKIVQPSLRREGFSSIPDEKWEDVGGLDYLRKEFKNRIIRPIKYPEVHQASRFANQTGILLFGPPGCGKTLIAKAVANEAGANFIYIKGPELLNKFVGESEREIRLTFSRARACSPCILFFDEVDALSTKRGAEGGSGIERVVNQLLIELDGAGQRQNVFVIGATNRPDRMDEALLRPGRLGKQLYVPLPSTDQRFSILKALARKQPVDPTVDLRAIAEACENFSGADLAELVDEATRAALDEKYTAVEEALTSVEASSDTYTCKPRHFDIALSQVFPSVSPAKRRRYERLAKHFKAS 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g00563 771 PANTHER AAA-FAMILY ATPASE 36 409 - -
Adu04g00563 771 CDD AAA 266 409 - -
Adu04g00563 771 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 490 768 IPR027417 -
Adu04g00563 771 MobiDBLite consensus disorder prediction 105 139 - -
Adu04g00563 771 CDD AAA 519 662 - -
Adu04g00563 771 ProSitePatterns AAA-protein family signature. 632 650 IPR003960 GO:0005524|GO:0016887
Adu04g00563 771 Pfam AAA+ lid domain 685 723 IPR041569 -
Adu04g00563 771 Gene3D - 663 747 - -
Adu04g00563 771 PANTHER AAA-FAMILY ATPASE 409 767 - -
Adu04g00563 771 Gene3D - 490 762 IPR027417 -
Adu04g00563 771 MobiDBLite consensus disorder prediction 57 143 - -
Adu04g00563 771 SMART AAA_5 528 664 IPR003593 -
Adu04g00563 771 SMART AAA_5 270 419 IPR003593 -
Adu04g00563 771 Gene3D - 235 406 IPR027417 -
Adu04g00563 771 Pfam ATPase family associated with various cellular activities (AAA) 532 661 IPR003959 GO:0005524|GO:0016887
Adu04g00563 771 Pfam ATPase family associated with various cellular activities (AAA) 274 410 IPR003959 GO:0005524|GO:0016887
Adu04g00563 771 Pfam Nucleolin binding domain 12 59 IPR031996 -
Adu04g00563 771 MobiDBLite consensus disorder prediction 64 104 - -
Adu04g00563 771 ProSitePatterns AAA-protein family signature. 388 406 IPR003960 GO:0005524|GO:0016887
Adu04g00563 771 PANTHER NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE 36 409 - -
Adu04g00563 771 PANTHER NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE 409 767 - -
Adu04g00563 771 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 236 485 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g00563 Adu-Chr4 7015866 7019984 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g00563 469 769 Calmodulin-binding Proteins AT3G56690 42.345 4.90e-66 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g00563 K14571 - gmx:100809594 832.017