Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g00523 ATGGCGGAATCGGACAACGAGTCAGGAGGACAAGGAGGGAACACGAGCGAGTTCAGGGAGCAGGACAGGTTCCTGCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCGCTGCCGGCGAACGCGAAGATCTCGAAAGAGGCTAAGGAGACGGTGCAGGAGTGTGTGTCGGAGTTCATAAGCTTCATAACGGGTGAAGCCTCCGATAAGTGCCAAAAGGAGAAACGCAAGACCATCAACGGCGACGATCTGCTGTGGGCCATGACTACCCTTGGATTTGAGGAGTACGTGGAGCCTCTTAAGGTGTATCTACACAAGTATCGGGAGATGGAGGGTGAGAGGACTGCTTTGATTGGAGGGACTAGGCAGCATGCTGGTGCTGATCAGACCAACGACGGTGGTGCTGGTGGTGGTGGCGGGATTGTGCCATCACATATGATGATGATGATGGGGCATCAGCATCAGTCTCATGGACACATGTTTGGATCTGGTGGAGCGACTGGATCAGCATCTTCTCGAAGGATCACTAGGTAG 534 0.5393 MAESDNESGGQGGNTSEFREQDRFLPIANVSRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEEYVEPLKVYLHKYREMEGERTALIGGTRQHAGADQTNDGGAGGGGGIVPSHMMMMMGHQHQSHGHMFGSGGATGSASSRRITR 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g00523 177 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 88 IPR003958 -
Adu04g00523 177 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 159 IPR027113 GO:0001228|GO:0006355|GO:0016602
Adu04g00523 177 MobiDBLite consensus disorder prediction 160 177 - -
Adu04g00523 177 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
Adu04g00523 177 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Adu04g00523 177 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Adu04g00523 177 Gene3D Histone, subunit A 12 134 IPR009072 GO:0046982
Adu04g00523 177 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y PROTEIN 1 159 - -
Adu04g00523 177 MobiDBLite consensus disorder prediction 1 21 - -
Adu04g00523 177 SUPERFAMILY Histone-fold 21 122 IPR009072 GO:0046982
Adu04g00523 177 MobiDBLite consensus disorder prediction 122 177 - -
Adu04g00523 177 ProSitePatterns NF-YB/HAP3 subunit signature. 55 71 IPR003956 GO:0005634|GO:0006355|GO:0043565
Adu04g00523 177 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g00523 Adu-Chr4 6409026 6409969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g00523 1 157 CCAAT-HAP3 Transcription Factor Family AT4G14540 73.457 2.56e-72 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Adu04g00523 CBFD_NFYB_HMF 1.3e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g00523 K08065 - gmx:100778034 231.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu04g00523 04 6409026 6409969 Adu04g00523 04 6409026 6409969 ECH
Adu01g02876 01 99135293 99137586 Adu04g00523 04 6409026 6409969 PCT