LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu04g00505	ATGGAGCAACAAATCCTTGCAGACCAAAACTTCCCTCTCTTCAAACCCACCTCCAAACCCTCCCGAAACCCTATCTCCACCGTCAACAACAATCACTCAACCTCTAAGCCACCAGCTGCCGCCGCATCCACCACCACAGATTCCTCCTCTTCCTCCGCCTCCACATTCGCCCAACTCGGCCTTGCCGAATGGGCTGTCAAGACTTGCGGCGAGCTCGGGATGAAGCGTCCCCGGCGTGTTCAGTCGCACTGCATCCCGCGCGTGCTGGAGGGCCGCCACGTGCTCGGCATCGATGAAACTGGCAGCGGCAAGACCGCCGCTTTCGCCCTCCCGATCCTCCACCGCCTGTCGGAGCACCCGTTCGGTGTGTTCGCGTTGGTGGTGACGCCCACTAGGGAACTGGCGTTCCAGCTAGCGGAGCAGTTCCGCGCCCTCGGTTCCTGCCTCCACCTCCGCATTGCAGTGGTTGTCGGCGGCATGGACATGCTTCGGCAGACCAAGGAGCTTGCTGCCAGGCCCCACATCGTTATTGCCACGCCGGGGAGGATCAAGGCCTTGCTCGAGAATCCTGATATTCCTCTAGTTTTTGCTAGAACTAAGTTCCTTGTCCTGGATGAAGCAGATCGAGTTCTTGATGTCGGTTTTCAGGAGGAATTGAAATTTATCTTTAAGTGCTTACCAGAAAATCGACAAAATCTGTTCTTTTCTGCAACAACCACAAGTAATCTGCAAAAGTTGTCTGAGCGTTACCAGGATAGACTGTATGTCTATGAGGCATATGAAGGCCTGAAAACTGTAGAAACACTTAAGCAACAGGCTATGTTCATCCCTAAAAAGGTCAAGGAGGTATATTTGATGCATATTTTATCAAAAATGGAAGATATGGACATCCGATCTGCCATTGTATTTATCTCTACATGCAGAGATTGTCATCGTTTAAGTTTAATGCTAGAAGTGCTTGATCTTGAAGCAGCAGCTCTATATTCATTTAAATCGCAGGCTCAAAGGCTTGAGGCACTTCAACGGTTTAAATCAGGGAAGGTCTCTATACTGCTAGCAACAGATGTTGCCAGCCGTGGTTTGGATATCCCGACAGTCGACCTTGTTATCAATTATGATGTTCCAAGGTTTCCACGAGACTATGTTCATCGTGTTGGTCGTACTGCCAGAGCAGGTAGAGGAGGACTGGCTTTGAGCCTTGTCACCCAGAATGATGTTGAACTTGTTTGTGAAATAGAAGCTCTTATTGAAAGGCAACTTGAAATGATTGAATACAAAGAAAATGAGGTTCTTTCTATCATGAAAAAGGTTTTCAGTGCCAAAAATGTGGCAGAAATGAAGATGATGGATGATGGATTTGAGGAGAAAGCAAAGGAGAGGAAAAAACAGAAGCTGAAAATGCTAGCAGAGAAAGGATTGTTAAATAAAAGAGGTAATAAGAGAAAAAGAAACAAATTTGCAGAAGGAAAGAAGCAGAAAAAAGAAGTGGAAGCATCAGCAGATAAATCATCCTTAAAAAATGTGAGTAAGAAGAGGGAGTAA	1542	0.4708	MEQQILADQNFPLFKPTSKPSRNPISTVNNNHSTSKPPAAAASTTTDSSSSSASTFAQLGLAEWAVKTCGELGMKRPRRVQSHCIPRVLEGRHVLGIDETGSGKTAAFALPILHRLSEHPFGVFALVVTPTRELAFQLAEQFRALGSCLHLRIAVVVGGMDMLRQTKELAARPHIVIATPGRIKALLENPDIPLVFARTKFLVLDEADRVLDVGFQEELKFIFKCLPENRQNLFFSATTTSNLQKLSERYQDRLYVYEAYEGLKTVETLKQQAMFIPKKVKEVYLMHILSKMEDMDIRSAIVFISTCRDCHRLSLMLEVLDLEAAALYSFKSQAQRLEALQRFKSGKVSILLATDVASRGLDIPTVDLVINYDVPRFPRDYVHRVGRTARAGRGGLALSLVTQNDVELVCEIEALIERQLEMIEYKENEVLSIMKKVFSAKNVAEMKMMDDGFEEKAKERKKQKLKMLAEKGLLNKRGNKRKRNKFAEGKKQKKEVEASADKSSLKNVSKKRE	513

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu04g00505	513	CDD	DEADc_DDX49	56	258	-	-
	Adu04g00505	513	SMART	helicmild6	311	392	IPR001650	-
	Adu04g00505	513	SMART	ultradead3	73	272	IPR014001	-
	Adu04g00505	513	Gene3D	-	19	257	IPR027417	-
	Adu04g00505	513	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	85	257	IPR014001	-
	Adu04g00505	513	Pfam	Helicase conserved C-terminal domain	293	392	IPR001650	-
	Adu04g00505	513	Gene3D	-	264	512	IPR027417	-
	Adu04g00505	513	MobiDBLite	consensus disorder prediction	7	50	-	-
	Adu04g00505	513	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	203	211	IPR000629	-
	Adu04g00505	513	PANTHER	RNA HELICASE	53	482	-	-
	Adu04g00505	513	MobiDBLite	consensus disorder prediction	468	513	-	-
	Adu04g00505	513	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	122	410	IPR027417	-
	Adu04g00505	513	CDD	SF2_C_DEAD	269	401	-	-
	Adu04g00505	513	MobiDBLite	consensus disorder prediction	489	513	-	-
	Adu04g00505	513	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	284	431	IPR001650	-
	Adu04g00505	513	PANTHER	ATP-DEPENDENT RNA HELICASE DDX49-RELATED	53	482	-	-
	Adu04g00505	513	Pfam	DEAD/DEAH box helicase	79	246	IPR011545	GO:0003676\|GO:0005524
	Adu04g00505	513	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	54	82	IPR014014	GO:0003724

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu04g00505	Adu-Chr4	6205238	6209085	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu04g00505	55	410	Eukaryotic Initiation Factors Gene Family	AT3G13920	31.461	4.70e-53	183

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu04g00505	K14778		-	gmx:100798597	758.059