Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g00408 ATGGACTACTACTGGACTAGAGGTCACACCCTCGGCCGGGGATCCACAGCCACCGTCTACACTGCTGAATTTCATGGGTCTGGTGAACTCTTTGCCGTGAAGTCAGCGGAGGTACACCGGTCTGAGGAGCTGCGGAAAGAACAGGGTCTTCTTTCATCGCTCAATTGTCCTCAGATTGTCAAGTACAAAGGGTACGATGTTACGTACGAGGATGGTCGGTACTTTTACAACCTCTTCTTGGAATACGCGCCAAGGGGGACCCTGCTTGACGTAATTGCCCATTACAATCACGGCGGTGCCACCATGGAACACTCATTGGCAAGTGTCTACACGCGCCAGATTCTGTTGGGACTCAACTATCTTCATTCCAATGGGATAGTACATTGCGATGTAAAAGGGCAGAACGTTCTCATCACCCAACATGGCGCCAAAATCGCCGACTTTGGTTGTGCCCGCAAAGTTGGCTCCGGCGCCGGCGGACGAGGAGGGGTTATCGCTGGAACGCCGGCGTTCATGGCGCCGGAGGTGGCGCGTGGGGATGAACAGGGATTCCCAGCTGACGTGTGGGCCCTGGGATGCACCATTCTTGAGATGGTTACCGGGAAACCGCCGTGGAATGACGTTTCCGGCGACCCTGTTTCGGTGCTTTATCGGGTTGGATTCTCCGGCGAGGCGCCAGAGATTCCGGAATCTGTATCGGAGGAAGTTAAGGACTTCTTGGGGAAGTGCTTGAGGAGTGAAGCGAGTAAGAGATGGACGGTGAAGGAGCTTCTGGGACACGCGTTCGTTGCGGAATCGCGTTTTGTGGGAATAGAATGTGATGAGCATGATTTGGACACACCCACAAGTGTTTTGGAACCACAAGGCCTTTGGAACTGGCACACCAATCAGGACTCGCCACGTGGCATATCTTCAATGAATTCTCCTAGTGCTAGGGACAGAGTTCTTGGGTTGTGTGGTGATGATGAGCCTAACTGGGATCTTAATAATGCTGATGATGATAAGTGGATCACTGTGAGAAGTAATGAGGACTACTCTCCCGTTGGGATAGCTCAGGATTTTTGTTCAGACAATGTTAGGATCCTTAGAGAGGATGATGAGAATGTTTTGGTGAATTTTTATGAACCACCACAGGATGTAGTAGTAATTTGCAATGTAATTCATGAATTGAGTAGATGGAATGATGTAGTAGTTGTTGTTGGTGATTCTTACCTTTGCAGAATCATTGATTTGACACCGTCCAAATTGATACTTACTGAATGCACATCAGCATGGTTAATTTATCTTGGAGACTTTTAG 1299 0.4942 MDYYWTRGHTLGRGSTATVYTAEFHGSGELFAVKSAEVHRSEELRKEQGLLSSLNCPQIVKYKGYDVTYEDGRYFYNLFLEYAPRGTLLDVIAHYNHGGATMEHSLASVYTRQILLGLNYLHSNGIVHCDVKGQNVLITQHGAKIADFGCARKVGSGAGGRGGVIAGTPAFMAPEVARGDEQGFPADVWALGCTILEMVTGKPPWNDVSGDPVSVLYRVGFSGEAPEIPESVSEEVKDFLGKCLRSEASKRWTVKELLGHAFVAESRFVGIECDEHDLDTPTSVLEPQGLWNWHTNQDSPRGISSMNSPSARDRVLGLCGDDEPNWDLNNADDDKWITVRSNEDYSPVGIAQDFCSDNVRILREDDENVLVNFYEPPQDVVVICNVIHELSRWNDVVVVVGDSYLCRIIDLTPSKLILTECTSAWLIYLGDF 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g00408 432 PANTHER MAP KINASE KINASE KINASE 5 357 - -
Adu04g00408 432 Pfam Protein kinase domain 6 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Adu04g00408 432 SMART serkin_6 5 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Adu04g00408 432 SUPERFAMILY Protein kinase-like (PK-like) 5 298 IPR011009 -
Adu04g00408 432 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
Adu04g00408 432 ProSiteProfiles Protein kinase domain profile. 5 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Adu04g00408 432 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 5 357 - -
Adu04g00408 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Adu04g00408 432 CDD STKc_MAPKKK 5 263 - -
Adu04g00408 432 Gene3D Transferase(Phosphotransferase) domain 1 2 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g00408 Adu-Chr4 4791855 4793552 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g00408 5 263 MAP Kinase Kinase Kinase AT2G32510 56.274 2.45e-95 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Adu04g00408 Pkinase 1.4e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g00408 K20716 - gmx:100802174 390.963
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g01540 08 25630990 25632190 Adu04g00408 04 4791855 4793552 ECH
Adu03g01164 03 12852961 12856401 Adu04g00408 04 4791855 4793552 ECH
Adu04g00408 04 4791855 4793552 Adu04g00408 04 4791855 4793552 ECH
Adu04g00408 04 4791855 4793552 Adu09g02535 09 112810206 112814955 ECH