Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g00362 ATGGAAAACTTCACCTTGTCTTCGTCTTCTTCTTCATCTTCAACTTCTCCTCCTTCATCATCGCACATTGCAGGTGCAGCTTTCGACGACTATTCCGAGGACTTCTGCAGCATTTGTTTGGAGCCATTTGGCATCAATGACCCATCTACTATCACCTCTTGCAAACACGAATATCATCTGCACTGTATTCTTGAATGGTCAGAGAGAAGCAGAGAATGTCCAATATGTTTGCAGCTGCTTTCTTTCATTGATCCTTCTAGCCAAGAGCTTCTAGCTGCAGTGGAGGCTGAAAAATGTTCAAGGTCAAGAAACATATATCCATCTTCATTAACTAGTTCCCATATTCCCCATGATCAGCTCAATTATGACTATGGCGATTCTTACTCAGATGAGTCTGATATTGATGATCAAATTATGCAACACCTAGTTGCTGCTTCCAGCAGATCTCGTTTTCTCCATAGACGGGAAAGGCAAAGATCTTCTAGTGCAGGTCCATCAGAGGTGTTTGTTTCCAATCCTCCTGTGCATGTGTCTGCTGTGCGACCAACACTCACCATTTCACCCACCGGCAGTAGTTCACCAACTTCTGGTGTACCGTCTACTGTTCACATTCAACCTCCAACATCTGCTTTTCCCCCAGTTGTTGGTGAAGTTGCAGGAATTACTATGGCTGAGAATGATGTTCCTTTCAAACCCAGAGTTCTGTATACCCAGTCACCATCCGAGAGTGGAAGGAGACTAAATACCCCTGAGATGTTCTCTATCCCTGAGTCCTTCAGATCCAAATTTTCTGCTGCTTCAGCCAGGTATAAGGAATCAATAACCAAAAGTACGCGTGGCCTTAAAGAGAAGTTAATTGCTCATAATGCCTCAGTAAAAGAGCTGAGTAAAGGTGTTCAACGTGAGATGAATGCAGGAATTGCTGGTGTTGCACGGATGATTGAACGCCTTGATCTTTCCTCAAAGCGATCTAATTTTCCTCCCACTCCTGTTGGCACTGGGGGAAGTTCGGGATCCCCTGTAAAAGGAAAGTCAGTCGATGAGAATGACATTGACATGGGGCGTTCTCCTAGCATATACACTGAAAATGTGGTTCAGAATGTTAGGTCAGATGCTCCTTCAGTACCTGGCATGGTTGTTGGTCGAGTGGTTGCTGGTCGGGTGGAAATTCATCATTGTGTTCAGAGTGGAAAAGATGCTGCTGTGAGGACATAG 1215 0.4469 MENFTLSSSSSSSSTSPPSSSHIAGAAFDDYSEDFCSICLEPFGINDPSTITSCKHEYHLHCILEWSERSRECPICLQLLSFIDPSSQELLAAVEAEKCSRSRNIYPSSLTSSHIPHDQLNYDYGDSYSDESDIDDQIMQHLVAASSRSRFLHRRERQRSSSAGPSEVFVSNPPVHVSAVRPTLTISPTGSSSPTSGVPSTVHIQPPTSAFPPVVGEVAGITMAENDVPFKPRVLYTQSPSESGRRLNTPEMFSIPESFRSKFSAASARYKESITKSTRGLKEKLIAHNASVKELSKGVQREMNAGIAGVARMIERLDLSSKRSNFPPTPVGTGGSSGSPVKGKSVDENDIDMGRSPSIYTENVVQNVRSDAPSVPGMVVGRVVAGRVEIHHCVQSGKDAAVRT 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g00362 404 MobiDBLite consensus disorder prediction 182 205 - -
Adu04g00362 404 ProSiteProfiles Zinc finger RING-type profile. 36 76 IPR001841 -
Adu04g00362 404 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF1A 3 331 - -
Adu04g00362 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 81 IPR013083 -
Adu04g00362 404 SMART ring_2 36 76 IPR001841 -
Adu04g00362 404 MobiDBLite consensus disorder prediction 321 356 - -
Adu04g00362 404 Pfam Ring finger domain 36 76 IPR001841 -
Adu04g00362 404 MobiDBLite consensus disorder prediction 322 343 - -
Adu04g00362 404 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 3 331 - -
Adu04g00362 404 MobiDBLite consensus disorder prediction 150 205 - -
Adu04g00362 404 SUPERFAMILY RING/U-box 28 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g00362 Adu-Chr4 4213161 4216438 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g00362 5 84 C3H Transcription Factor Family AT4G00335 42.500 1.23e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g00362 K19043 - gmx:100775754 380.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu04g00362 04 4213161 4216438 Adu04g00362 04 4213161 4216438 ECH