Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g00340 ATGTCTCACATAGCTGTTGAGAGGAACAGGAGAAAGCAGATGAATGAACATCTCAAAGTTTTGAGATCCTTAACTCCATCTTTCTATATTAAAAGGGGAGATCAAGCGTCCATAATAGGGGGAGTTATAGAGTTCATCAAGGAGCTACACCAAGTGCTTCAAGCTTTGGAGTCCCAGAAAAGGAGAAAGAGCCTAAGCCCTAGCCCAGGCCCGAGCCCAAAAGCGCTGCAGCCGGCGTTTCAGCAGAACGATAGCCCCACCGGAATGGGTGGTGGTTCCTTTAAGGAACTAGGAGCAAGTTGCAACTCTTCAGTTGCGGATGTGGAAGTTAAAATCTCAGGTTCTAATGTGATCCTGAGAGTAATTTCCCACAGGATTCCGGGTCAAGTTGCAAAGATCATTGCTGTTTTGGAAGCACTTTCCTTTGAAGTTCTTCATCTCAACATCAGTAGCATGGAGGATACAGTTCTCTATCATTTTGTTGTTAAGATAGGGCTGGAATGTGAACTGAGTCTGGAGGAACTAGCAATGGAAGTACAACAAAGCTTCTGCACAGAGGCTATTATCACCGTGCTCTGA 579 0.4525 MSHIAVERNRRKQMNEHLKVLRSLTPSFYIKRGDQASIIGGVIEFIKELHQVLQALESQKRRKSLSPSPGPSPKALQPAFQQNDSPTGMGGGSFKELGASCNSSVADVEVKISGSNVILRVISHRIPGQVAKIIAVLEALSFEVLHLNISSMEDTVLYHFVVKIGLECELSLEELAMEVQQSFCTEAIITVL 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g00340 192 Pfam Helix-loop-helix DNA-binding domain 2 49 IPR011598 GO:0046983
Adu04g00340 192 SMART finulus 4 55 IPR011598 GO:0046983
Adu04g00340 192 MobiDBLite consensus disorder prediction 60 93 - -
Adu04g00340 192 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983
Adu04g00340 192 MobiDBLite consensus disorder prediction 75 89 - -
Adu04g00340 192 Gene3D - 1 64 IPR036638 GO:0046983
Adu04g00340 192 PANTHER TRANSCRIPTION FACTOR MUTE 1 189 - -
Adu04g00340 192 PANTHER TRANSCRIPTION FACTOR FAMA 1 189 IPR044283 GO:0003700|GO:0010052
Adu04g00340 192 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 67 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g00340 Adu-Chr4 4060882 4063789 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g00340 1 189 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06120 66.162 3.58e-86 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Adu04g00340 HLH 1.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g00340 - - aip:107635887 308.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu04g00340 04 4060882 4063789 Adu04g00340 04 4060882 4063789 ECH