Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g00288 ATGTTCCCGCTTTCTTCCTTGTCCGAAGCAGAGAAGGTTCTAGGAGAAATATCTAATTATAAAGTTCAGTTGGAGGCGGTAAAAGCCAAAATCAAATCTGCTAAATCAAAAGATGAGTCTGAATCTCTTAAATTTACTCAAAAGAAACTGATTAACAAGGCCTTGGCCAATATTGGAGCAGGTTGCAAGTTTCTTATATTTGCGCACCATCAGCCAATGATAGATGCGATACATGAGTGCCTTCTTAAGAAAAAAGTGGGTTGCATTTGGATTGATGGAGGTACACCCGCTGCATCAGGGCAACAATTGGTTACAGATTTCCAGGAAAAGGATTATATCAAGGCAGCTGTACTATCCATTAAAGCGGGAGGAGTTGGATTAACTTTAACTGCTGCAAGCACAGTTATCTTTACAGAACAATCCTGGACTCCAGGTGACCTAATTCAGGCCAAAGATCGTGCATATAGAATTGGTCTCATCAGTAAATATATACTAGTTGGGATGCGGTGCAATTCAAACCGGATAATTTGGGGGCAGGTGTTAGATGGCCATGAGAACACCTTAGCTGTGTCAAATAATCAGCCATTGAGTAGCCCTGCAAAGCATACTACTATTGGGCATAGGCCTTCAAAGCAGAGAACTCTTGACCAGTTTGTCAGAAGATGTGATAACGTGGATAGGTTGGAAGTCGGAATATCAGCCTGA 705 0.417 MFPLSSLSEAEKVLGEISNYKVQLEAVKAKIKSAKSKDESESLKFTQKKLINKALANIGAGCKFLIFAHHQPMIDAIHECLLKKKVGCIWIDGGTPAASGQQLVTDFQEKDYIKAAVLSIKAGGVGLTLTAASTVIFTEQSWTPGDLIQAKDRAYRIGLISKYILVGMRCNSNRIIWGQVLDGHENTLAVSNNQPLSSPAKHTTIGHRPSKQRTLDQFVRRCDNVDRLEVGISA 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g00288 234 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 51 185 IPR027417 -
Adu04g00288 234 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 50 196 IPR001650 -
Adu04g00288 234 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1 8 219 IPR030101 GO:0006281|GO:0031297|GO:0036310
Adu04g00288 234 Coils Coil 10 37 - -
Adu04g00288 234 SMART helicmild6 75 158 IPR001650 -
Adu04g00288 234 CDD SF2_C_SNF 42 158 - -
Adu04g00288 234 Pfam Helicase conserved C-terminal domain 57 158 IPR001650 -
Adu04g00288 234 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 8 219 - -
Adu04g00288 234 Gene3D - 16 223 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g00288 Adu-Chr4 3362169 3365009 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g00288 61 158 RAD5 or RAD16-like Gene Family AT1G02670 33.673 2.11e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g00288 K14440 - ahf:112723272 277.715