Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Adu04g00277 | ATGCAAGCAGCTCAAGCAGCAGCCACTGATGAAGTCTCTGAGATTTCACCCCAGATTAACCATTGTTCGAACAAAGAAGTTTCAGATAATAGACCAAGTGGGAAACGTCCTGATATTTCACTTCAAGTTCCACCTAGACCTGTAGGGTTCGGCAGTGGAAGGGCTTTGGACCATTCTCAAAGTTTCTCCAAAGGGATATCATCATCAAGAGGTTTTTTGCGGGCATTGAGCTTGAAAAGAAAAGCTAATGTAACAGATGGCGAAAGAAGCTGCCTCCTTAATTCAGACTCGAAGACATCTGCGGACAGTTCTAATATGGATTCGATATCCGACGCTGCATGGAAAAGATGCACTTCTCTTCCTGTTACTCCTGCATCAAATCTGTCTCCTTCGGTTTCAACACCTGTTTCTGCAAGGACTTATACTGAACAGAAGCAACATAAAGATGTTGGTCGTTCCAAGGTTTCAAGGTCCCTTTCTGTACCTGGGAGAAATGTTGTTATTGTAAGATCCATCTCCTTCTCTACCCGTAGTGAACAGGATCAGCAAGATACAAATGATGATCAGATAACTCCCGTGCCACCAGAAGGTGCTGATGATGAAGAAATTCCTGAAGAGGAAGCAGTGTGCAGGATATGTCTTGATGTCTGCGATGAAAGAAATACCTTGAAAATGGAATGCAGTTGCAAAGGTGACCTGAGATTGGTGCATGAAGAATGTGCAATAAAATGGTTTAGCACAAAGGGAAATAAGAAATGTGAAGTATGTGGGCACGAGGTTCAGAATTTACCCGTAACTTTGCTTCGTGTTTCCAGCTCTATTCAACGGCAAAATAGACAAGTGCAGGGTCAACTAAACTCAAGTTCAGAGTCAATAAATGCCTGGCAAGACTTTGTGGTGCTCGTCCTGATAAGCACAATATGCTACTTTTTCTTCATTGAACAGCTACTGCTTCCTGAGTTGAAGACTCAAGCCATCATAATAGCAGCACCATTTGCCTTTACATTGGGCCTCCTGGCATCTATTTTTGCAGTCATCCTTGCAATTAGAGAGTATATATGGACATATGCTGCTCTTGAGTTCGCTCTTGTGGCTATAACCGTGCATCTGTTTTATACCATGTTGCATTTGAAGGCCATCTATGCAATACTACTTTCATCAGTTTTGGGTTTTGGAATTGCTATGAGCCTCAACTATTTATATATCCAATATGTTACTTGGAGACTTCAGGTCTCTCATAGTGATAACCTTCCAGTTTGA | 1260 | 0.4206 | MQAAQAAATDEVSEISPQINHCSNKEVSDNRPSGKRPDISLQVPPRPVGFGSGRALDHSQSFSKGISSSRGFLRALSLKRKANVTDGERSCLLNSDSKTSADSSNMDSISDAAWKRCTSLPVTPASNLSPSVSTPVSARTYTEQKQHKDVGRSKVSRSLSVPGRNVVIVRSISFSTRSEQDQQDTNDDQITPVPPEGADDEEIPEEEAVCRICLDVCDERNTLKMECSCKGDLRLVHEECAIKWFSTKGNKKCEVCGHEVQNLPVTLLRVSSSIQRQNRQVQGQLNSSSESINAWQDFVVLVLISTICYFFFIEQLLLPELKTQAIIIAAPFAFTLGLLASIFAVILAIREYIWTYAALEFALVAITVHLFYTMLHLKAIYAILLSSVLGFGIAMSLNYLYIQYVTWRLQVSHSDNLPV | 419 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Adu04g00277 | 419 | Pfam | RING-variant domain | 210 | 256 | IPR011016 | GO:0008270 | |
Adu04g00277 | 419 | MobiDBLite | consensus disorder prediction | 175 | 203 | - | - | |
Adu04g00277 | 419 | MobiDBLite | consensus disorder prediction | 1 | 65 | - | - | |
Adu04g00277 | 419 | MobiDBLite | consensus disorder prediction | 124 | 158 | - | - | |
Adu04g00277 | 419 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 202 | 263 | IPR011016 | GO:0008270 | |
Adu04g00277 | 419 | SMART | ringv_2 | 209 | 257 | IPR011016 | GO:0008270 | |
Adu04g00277 | 419 | MobiDBLite | consensus disorder prediction | 124 | 141 | - | - | |
Adu04g00277 | 419 | PANTHER | OS02G0165000 PROTEIN | 1 | 416 | - | - | |
Adu04g00277 | 419 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 196 | 265 | IPR013083 | - | |
Adu04g00277 | 419 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Adu04g00277 | 419 | CDD | RING_CH-C4HC3_MARCH | 210 | 257 | - | - | |
Adu04g00277 | 419 | MobiDBLite | consensus disorder prediction | 175 | 190 | - | - | |
Adu04g00277 | 419 | PANTHER | ZINC FINGER PROTEIN | 1 | 416 | - | - | |
Adu04g00277 | 419 | SUPERFAMILY | RING/U-box | 206 | 260 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Adu04g00277 | Adu-Chr4 | 3241969 | 3247442 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Adu04g00277 | 163 | 317 | C3H Transcription Factor Family | AT2G37950 | 29.762 | 1.05e-11 | 62.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Adu04g00277 | - | - | gmx:100527094 | 669.077 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Adu04g00277 | 04 | 3241969 | 3247442 | Adu04g00277 | 04 | 3241969 | 3247442 | ECH |