Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g00265 ATGAACAATGCTAATGCTCGAGTTGGTGAGAACTCAAAGGAGCATAATCCAAGACATGAGGTCTCGTTCTCACCGCGTGGTTCAGGACTTGTCTTCCATGGAAGAAGATTCAGCACTTTCAGAGTTGATCTCCGACGATGGGTTGAGGCAGAGTTGCTGGGCGGAGTTTGCCGGAGCTGGAGACACATCACTAAAGAGATCGTTAAGACTCCTGAGCTATCAGCAAAATTAACCTTCCCAATTTCTGTTAAACAGCCTGGTCCAAGGGAGCATCTCCTCCAGTGCTTTATAAGGCGCAACCGGTCCACCCAAACATACTATTTGTATCTTAGCTTATCTAATACACTATCTGAAGATGGCAAGTTCCTTTTGGCTGCACGCAAATGCAGACGTCCCACCTGCACAGATTATATCATCTCTCTGCATGCAGACGACATGTCAAAGGGAAGCAACACCTATGTTGGAAAACTGAGATCAAATTTTCTCGGAACCAAGTTCACAATCTATGATGGGCAGCCTCCCCATGCCCGGGCAAAGATTACAAAAAGTCGCTCCACCAGGCTGGTGAATTTAAAACAAGTTGCACCCAAGGTTCCTACAGGCAATTATCCAGTGGCTCACATATCATATGAATTGAATGTGCTAGGCTCTAGGTAA 657 0.4597 MNNANARVGENSKEHNPRHEVSFSPRGSGLVFHGRRFSTFRVDLRRWVEAELLGGVCRSWRHITKEIVKTPELSAKLTFPISVKQPGPREHLLQCFIRRNRSTQTYYLYLSLSNTLSEDGKFLLAARKCRRPTCTDYIISLHADDMSKGSNTYVGKLRSNFLGTKFTIYDGQPPHARAKITKSRSTRLVNLKQVAPKVPTGNYPVAHISYELNVLGSR 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g00265 218 Pfam Tub family 83 218 IPR000007 -
Adu04g00265 218 PRINTS Tubby superfamily signature 153 177 IPR000007 -
Adu04g00265 218 PRINTS Tubby superfamily signature 137 153 IPR000007 -
Adu04g00265 218 PRINTS Tubby superfamily signature 202 218 IPR000007 -
Adu04g00265 218 SUPERFAMILY Tubby C-terminal domain-like 71 218 IPR025659 -
Adu04g00265 218 Gene3D Tubby Protein; Chain A 79 218 IPR025659 -
Adu04g00265 218 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 53 218 - -
Adu04g00265 218 MobiDBLite consensus disorder prediction 1 23 - -
Adu04g00265 218 PANTHER TUBBY-RELATED 53 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g00265 Adu-Chr4 3105247 3112204 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g00265 54 218 TUB Transcription Factor Family AT2G47900 70.659 2.16e-86 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Adu04g00265 Tub 3.3e-47 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g00265 K19600 - gmx:100815464 295.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu04g00265 04 3105247 3112204 Adu04g00265 04 3105247 3112204 ECH