Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g00253 ATGTTGATTTTCTTTCCGCTTCACTCGAGTGTAGGATCCAACATTTTCAGCCTTCACTTCCCATGCATCAATAGGATTAGGGTTTTCAGATATATGGGTTGCATATGCTTCAAAGGGAAATCTGCAGAGGAATACGTTGCAGAGAACCGCATAAGAAGGGGCAAGTCCAAGGCGTTGAAATCAAAGCTTGCGAGTAATTCTCTTCCCCTCATAGACGTTGGGAATGATGCCGTCCAAGGGGAGAACGAAGAGGTTCAGGTGGCTGTGGCACCCACGGTGTTCAGTGTGACCAACGGGGAGCGAGGAGCTCTGGTTATCGCTGGATGGCCCTCTTGGCTCGCTGCCGTTGCTGGGGAAGCCATTAATGGGTGGATTCCACGTAGAGCTGACTCCTTTGAGAAGTTCGATAAGATTGGACAAGGAACTTATAGTAGTGTTTATAGAGCTCGTGATCTTGAAACAAATAAAATTGTTGCATTAAAGAAGGTTCGATTTGCTACTATGGATCCAGAAAGTGTTCGCTTTATGGCAAGGGAAATTCTTTTGCTGCGAAGGCTTGATCATCCAAATGTCATGAAGCTAGAAGGCATGATTACTTCCAGGGTTTCTGGTAGCTTGTACCTTATTTTTGACTATATGGAACATGATCTTGCAGGGCTTGCAGCAATACCTGGCATCAAGTTTTCTGAAGCACAGATCAAATGTTATATGCAACAACTACTTCGTGGTCTTGAGCATTGCCACGGTCGAGGTGTTATGCACCGTGACATCAAGGGCTCAAATCTTCTAGTTGATAATAATGGCCGTTTGAAGATTGGTGATTTTGGACTTGCAACTTCGTTTCAGCCATCTAAGGGGAAGCCTTTAACAAGTCGTGTTGTAACCTTGTGGTACCGACCGCCTGAACTTTTACTCGGAGCTACAGATTATGGAGTTTCTGTGGACTTATGGAGTTCTGGTTGTATTCTTGCTGAATTGTTTTCTGGAAAGGCTATAATGCCTGGACGAACAGAGGTGGAGCAACTTCATAAAATTTTCAAACTTTGTGGGTCTCCTTCTGAAGAATACTGGAAGAAGTCAAAGCTGCGAAATGCAACAATTTTCAAACCTCAACAACCATACAAACGGGTTGTTTCTGAGACATTCAAGAATTTTCCTTCATCTGCACTGGGCCTATTGGAGGTACTTCTTGCTACAGAACCTGAAGATCGAGGAACAGCATCTTTAGCACTTCAAAATGAGTTCTTTACCACAGAGCCACTTCCATGTGATCCATCAACTTTGCCAAATTATCCACCGAGTAAGGAGTTTGATGTCAAACTTCAACAAGAGGAAGCTAGAAGGAGAGAGAGATCAACAAATAAAGAGCGTGAACAAGGATCAGTTAGGAGGAAGTTAAAAGAGTCTAAAAATGTTCTAGCTCCTGATGCTAATGCTGAATTGCAAGCATCAATAGAGAAGCGACAAAGGCAACCTAATTCAAAATCCATTGTTGAAAGCTACAATCCTAAAGAGGATGGCAACTCTGGCTTCCCTCTTGGACTTGCAAAGCCAAGAGTTCTCAGTGTCTTCTCTCATTCCGGCCAGTCAATGCATCCAAGTGCATATGGTTCCTCAAACAATATGAATTTGAAAGAGGAAAATGTTCTTATTGGCTTCAATCATGACTTTGGATCAAGGCACACTGAATTGAGTAAACAAAAATTTCGTTGGCTTGATGGCACACAATTGTCCAAATTTTCTGGTTCATTTGCAGTTCGAGGTGATGGCAATTCGAATGATTTGCTGGATGGACTGAAATTGCACCAAAAGGACTTCAATCCTTTTGAAAAGGATCTTACCATGGGTTATGCTTCCAAAAACAAACGCTTCCACTATTCTGGACCATTGTTGTCACAGGGGGGGGGGAACATTGAAGACATGCTCAAGGAGCACGAAAGACAAATCCAACAGGCTGCCCGCAAAGGTCGTTTGGAAAAGGACAACACAAAAAAGGCTAAGAAGGAGAATGGCCTAACCGAATCACTACTATAG 2034 0.4312 MLIFFPLHSSVGSNIFSLHFPCINRIRVFRYMGCICFKGKSAEEYVAENRIRRGKSKALKSKLASNSLPLIDVGNDAVQGENEEVQVAVAPTVFSVTNGERGALVIAGWPSWLAAVAGEAINGWIPRRADSFEKFDKIGQGTYSSVYRARDLETNKIVALKKVRFATMDPESVRFMAREILLLRRLDHPNVMKLEGMITSRVSGSLYLIFDYMEHDLAGLAAIPGIKFSEAQIKCYMQQLLRGLEHCHGRGVMHRDIKGSNLLVDNNGRLKIGDFGLATSFQPSKGKPLTSRVVTLWYRPPELLLGATDYGVSVDLWSSGCILAELFSGKAIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLRNATIFKPQQPYKRVVSETFKNFPSSALGLLEVLLATEPEDRGTASLALQNEFFTTEPLPCDPSTLPNYPPSKEFDVKLQQEEARRRERSTNKEREQGSVRRKLKESKNVLAPDANAELQASIEKRQRQPNSKSIVESYNPKEDGNSGFPLGLAKPRVLSVFSHSGQSMHPSAYGSSNNMNLKEENVLIGFNHDFGSRHTELSKQKFRWLDGTQLSKFSGSFAVRGDGNSNDLLDGLKLHQKDFNPFEKDLTMGYASKNKRFHYSGPLLSQGGGNIEDMLKEHERQIQQAARKGRLEKDNTKKAKKENGLTESLL 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g00253 677 SMART serkin_6 132 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Adu04g00253 677 ProSiteProfiles Protein kinase domain profile. 132 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Adu04g00253 677 ProSitePatterns Protein kinases ATP-binding region signature. 138 161 IPR017441 GO:0005524
Adu04g00253 677 Pfam Protein kinase domain 132 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Adu04g00253 677 MobiDBLite consensus disorder prediction 438 471 - -
Adu04g00253 677 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Adu04g00253 677 MobiDBLite consensus disorder prediction 648 671 - -
Adu04g00253 677 MobiDBLite consensus disorder prediction 484 503 - -
Adu04g00253 677 Coils Coil 635 662 - -
Adu04g00253 677 Gene3D Phosphorylase Kinase; domain 1 127 219 - -
Adu04g00253 677 Gene3D Transferase(Phosphotransferase) domain 1 220 456 - -
Adu04g00253 677 SUPERFAMILY Protein kinase-like (PK-like) 125 424 IPR011009 -
Adu04g00253 677 PANTHER CELL DIVISION PROTEIN KINASE 83 595 - -
Adu04g00253 677 CDD STKc_CDK9_like 132 416 - -
Adu04g00253 677 MobiDBLite consensus disorder prediction 648 677 - -
Adu04g00253 677 PANTHER KINASE CDK9, PUTATIVE-RELATED 83 595 - -
Adu04g00253 677 MobiDBLite consensus disorder prediction 420 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g00253 Adu-Chr4 3010451 3015349 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g00253 124 459 Core Cell Cycle Gene Families AT5G10270 49.435 1.81e-113 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Adu04g00253 Pkinase 5.4e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g00253 - - aip:107638508 1234.17