Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g00210 ATGGACGCTCAACAAACTACCAACAGAATGTGTTCTATAACTCAAATGAAGCAATTCCAATCAAATTCTGCGGGTGGTCTTCATTGTCAAGGTAAAAAGCCAAGTGTCAATTGGTCGCAACATGCCGAAGCACATCAAAACTTTTCCTGCCAGCTCAAGTTCTTGAGCTCCAATTTCCTATTCTCTTTGCCAACACAGAAGCCTCAAAATGGAGAACCAACGGATGGGAGGTTTGTAATCAATCAGAATCCAAATATTCAGACTTCACAGAGGGCACAAGTTGAGAAGGCTTGGCTTGCTCTTTCAAGTCTCCAGAATTCTAGCAGGAGCTATCCCCAACCTGGAAAAACTGTTCAAGTTACTCCTCGGCACCATGAAGACAGGCGAATGAACCCCTTACAAAGGACCCATGAGAACGATAAGCTTAAGCCTCCTGATGTTACCACAACTCCAATTGTTACTAATCATAATTCACAAGTTTTGGACAGTTCAGTGAACAAGCATATCAAGCATGCTGGCCAAATCAACGAGGCATCAACAGGCATGGTTGTTGACATTGATGATGATGACATACTTGAGACCATTGATATTGATCAAATAGTGGAGAACTATCAGTCATCTTCCACACCCAAACCTCCAATTTCCAAATTCCCTCATATTACACCAACTGCAGATACAAATAATTTTGCTAGAGAGGGGGGTAACTGTTTGCCACCAGAACTTTGTATAGATTGCAATCATGGTTACAAGTTAGGGCTTTGTCCTGAAGCAACAAGTCATTTGCAGGAATTTAAGGATAATCTGATTGCTATTTCTAATGAACTACTTGACAATGTTGACAACCTTACTTCTTTGCAGTTGGCAAAGCTTCGGCAAGATAGGTCACAGCTGAATATGAAAATTCAGCAGCTTGAAAAATATATTCATTCCAATAATCTTGAGGACAGGAAAAAGTCAAATTTGTTTGCATCCACGGCACCTACATCATTTGTATATGAAACTCCTCAGCAGACTCTCCACAGTAATGCAACAAAGACATATGAATCTCAGGATTATGTGGGTAATGGGACATGTGGGTCATTGTTCCAGTCTCTTTCATTCTCTTGTGCAGATACATATGGCGTGTCATCAGGTCCAGTGTCGAGGGAAGCTTTCATCCCAAAGATTATTGAAGTAAATTACATTGAAGGTTCTGGAGACAAGCGCTGGAGCAGTAAGGATTTTCCTTGGACAAAACAGTTGGAGGTTAATAATAAAAAAGTTTTTGGAAATCACTCATTCCGCCCCAATCAAAGAGAGATCATTAATGCCACAATGAGTGGATGTGATGTTTTTGTTTTGATGCCCACTGGTGGAGGAAAAAGTCTGACCTATCAGCTGCCAGCTCTTATCTGTCCTGGCATAACATTAGTAATTTCTCCCCTTGTGTCCCTTATTCAAGATCAAATTATGCATCTACTACAGGCAAATATATCCGCTGCTTACTTAAGTGCTAATATGGAATGGACTGAACAGCAAGAGATCTTTAGAGAACTTAATTCCGAATATTGTAATTATAAGTTGTTGTATGTAACACCAGAAAAGATTGCCAAAAGTGACGTGCTTTTACGAAACCTGGAGAGTTTACATGCTCGAGAATTGCTTGCAAGAATTGTAATTGATGAGGCTCACTGTGTGAGTCAATGGGGGCATGATTTTAGACCAGATTATCAGGGACTTGGCATATTGAAACAGAAATTCCCAAATACTCCTGTTTTAGCTTTAACAGCTACTGCAACAGCTAGTGTCAAAGAGGACGTTGTGCAAGCATTAGGACTTGTTAACTGCATTATTTTCCGGCAGAGTTTTAATCGCCCAAACTTAAGGTATTCTGTCCTTCCCAAGACCAAAAAGTGTTTGGAAGACGTTGACAAATTCATTAGGGAAAACCATTTTGATGAGTGTGGCATTATATATTGCCTTTCTCGAATGGACTGTGAAAAGGTTGCTGAAAAGTTGCAGGAGTTTGGACATAAGTGTGCATTTTATCATGGTAACATGGATCCTGCTCAACGTGCCTTTGTTCAAAAGCAGTGGAGTAAAGATGAGATCAATATAATTTGTGCTACTGTGGCATTTGGAATGGGTATTAACAAGCCTGATGTTCGCTTCGTAATCCATCATTCCCTTCCAAAATCTATTGAAGGTTATCATCAGGAATGTGGACGAGCTGGTAGAGATGGTCTACGTTCTTCCTGTATATTATATTACAGCTACAGTGATTATATTCGAGTTAAGCATATGATAAGTCAAGGAGCAATAGAGCAAAGTTCAATGACATATGGATACAGTCGCTCAAATATGACAAATTCAGGAAGGATATTGGAAACAAACACTGAAAACCTTTTGCGAATGGTCAGTTATTGTGAAAATGACGTTGATTGTAGGCGTCTTCTGCAGCTTGCTCATTTTGGGGAGAAGTTTGATTCTTCAACATGTCAGAAAACATGTGATAATTGTTTGAAGAACACAAGTTTTATTGAGAAAGATGTCACCGAGATTGCAAAGCAATTGGTTGAACTGGTTAAGCTAACTGGGCAGAAGGTCTCATCATCACATATATTAGAAGTCTATCGTGGATCCTTAAGCCAGTTGGTCAAGAAACACCGTCATGATACTTTGAGCCTTCATAGTGCTGGGAAGCATCTAGCTAAGGGTGAGGCTTCTCGAGTATTGCATCATCTTGTTGTAGAGGATTTTCTTGTGGAGGAGGTTAAAAAAAGTGATTTTTATGGATCAGTATCATCAATATTGAAGGTAAATGACCCCAAGGTCCGCAACCTGTTGCTCGGGGGCCAGAGAATTATACTGAGGTTCCCATCGTCCATAAAAGCATCAAAATTAGCGAAGTTCGAGTTCACTCCAGCTAAAGGATCTCTGACATCTGGAAAACAAAATAGTCATCAAATTGATACTCCTGCTCAGCCCCAAACTCAAGTTGACATGAATCTTTCAGCAAAGTTATACTCAGCATTGCGGTTGCTGCGGGCAACTATTCTTGGTGAAGCTGGAGACGATGTCTTGGCTCACCACGTATTCTGTAATTCTCTGTTGCAGCTGATGAGCAAGAAAGTACCAAGAACAAAGGAAGAACTCCTTGAACTCAATGGCATGAGCAAGGCCAAGGTAAGCAATTATGGTGATCAGATACTGAAAACCATTGAAAATACTATTAATGAGTATTACAAGTTGGATAAAAGCAGCAATGGCAGTGCTGATTCTGCAAAAAGGAGACGAGATGCAAATGGAGGCCTAGATAGAAATCTTGAGGATGATGATGATGAGTTGACTAAAAGTACTGGTCGCTTAAAGAAAAGGACAGTGCAGAGAAATAATAAAAAGGCTGAGATATACCATTCTGAAGAGGAAGATAATTACTATGGATGTCTTGATGAGGACCTAGATTTTGACAATATAGAAAATGAAGCACTAAATAGAATAAACAGTAGGAATGCTAATGGAAGAGTACTGCCTCAATGGACACCATCTTGA 3531 0.3993 MDAQQTTNRMCSITQMKQFQSNSAGGLHCQGKKPSVNWSQHAEAHQNFSCQLKFLSSNFLFSLPTQKPQNGEPTDGRFVINQNPNIQTSQRAQVEKAWLALSSLQNSSRSYPQPGKTVQVTPRHHEDRRMNPLQRTHENDKLKPPDVTTTPIVTNHNSQVLDSSVNKHIKHAGQINEASTGMVVDIDDDDILETIDIDQIVENYQSSSTPKPPISKFPHITPTADTNNFAREGGNCLPPELCIDCNHGYKLGLCPEATSHLQEFKDNLIAISNELLDNVDNLTSLQLAKLRQDRSQLNMKIQQLEKYIHSNNLEDRKKSNLFASTAPTSFVYETPQQTLHSNATKTYESQDYVGNGTCGSLFQSLSFSCADTYGVSSGPVSREAFIPKIIEVNYIEGSGDKRWSSKDFPWTKQLEVNNKKVFGNHSFRPNQREIINATMSGCDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANISAAYLSANMEWTEQQEIFRELNSEYCNYKLLYVTPEKIAKSDVLLRNLESLHARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLRYSVLPKTKKCLEDVDKFIRENHFDECGIIYCLSRMDCEKVAEKLQEFGHKCAFYHGNMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGLRSSCILYYSYSDYIRVKHMISQGAIEQSSMTYGYSRSNMTNSGRILETNTENLLRMVSYCENDVDCRRLLQLAHFGEKFDSSTCQKTCDNCLKNTSFIEKDVTEIAKQLVELVKLTGQKVSSSHILEVYRGSLSQLVKKHRHDTLSLHSAGKHLAKGEASRVLHHLVVEDFLVEEVKKSDFYGSVSSILKVNDPKVRNLLLGGQRIILRFPSSIKASKLAKFEFTPAKGSLTSGKQNSHQIDTPAQPQTQVDMNLSAKLYSALRLLRATILGEAGDDVLAHHVFCNSLLQLMSKKVPRTKEELLELNGMSKAKVSNYGDQILKTIENTINEYYKLDKSSNGSADSAKRRRDANGGLDRNLEDDDDELTKSTGRLKKRTVQRNNKKAEIYHSEEEDNYYGCLDEDLDFDNIENEALNRINSRNANGRVLPQWTPS 1176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g00210 1176 SMART ultradead3 423 626 IPR014001 -
Adu04g00210 1176 Gene3D - 841 951 IPR036388 -
Adu04g00210 1176 Pfam RecQ zinc-binding 752 834 IPR032284 -
Adu04g00210 1176 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 435 610 IPR014001 -
Adu04g00210 1176 Coils Coil 287 307 - -
Adu04g00210 1176 CDD DEXHc_RecQ 418 617 - -
Adu04g00210 1176 Pfam DEAD/DEAH box helicase 429 597 IPR011545 GO:0003676|GO:0005524
Adu04g00210 1176 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 549 558 IPR002464 -
Adu04g00210 1176 SMART RQC_2 843 954 IPR018982 GO:0006260|GO:0006281|GO:0043138
Adu04g00210 1176 Pfam RQC domain 840 955 IPR018982 GO:0006260|GO:0006281|GO:0043138
Adu04g00210 1176 SUPERFAMILY HRDC-like 998 1071 IPR010997 GO:0000166|GO:0044237
Adu04g00210 1176 Gene3D - 618 837 IPR027417 -
Adu04g00210 1176 Pfam HRDC domain 999 1067 IPR002121 GO:0003676
Adu04g00210 1176 Gene3D - 391 617 IPR027417 -
Adu04g00210 1176 Pfam Helicase conserved C-terminal domain 636 740 IPR001650 -
Adu04g00210 1176 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 635 785 IPR001650 -
Adu04g00210 1176 MobiDBLite consensus disorder prediction 106 128 - -
Adu04g00210 1176 MobiDBLite consensus disorder prediction 1078 1124 - -
Adu04g00210 1176 MobiDBLite consensus disorder prediction 1083 1115 - -
Adu04g00210 1176 PANTHER DNA HELICASE RECQ FAMILY MEMBER 130 1144 - -
Adu04g00210 1176 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 402 759 IPR027417 -
Adu04g00210 1176 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE 4A 130 1144 - -
Adu04g00210 1176 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 616 886 IPR027417 -
Adu04g00210 1176 CDD SF2_C_RecQ 618 750 - -
Adu04g00210 1176 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 419 894 IPR004589 GO:0004386|GO:0006310
Adu04g00210 1176 SMART helicmild6 660 741 IPR001650 -
Adu04g00210 1176 Gene3D HRDC domain 991 1078 IPR044876 -
Adu04g00210 1176 ProSiteProfiles HRDC domain profile. 995 1077 IPR002121 GO:0003676
Adu04g00210 1176 SMART hrdc7 995 1077 IPR002121 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g00210 Adu-Chr4 2729641 2737075 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g00210 649 764 Eukaryotic Initiation Factors Gene Family AT3G19760 25.000 1.90e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g00210 K10901 - gmx:100800006 1693.71