Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g00196 ATGTTAAAGGCAAAGGTATTCAATGGCGCGAACGTGTTCATGTCACGGAACCTGGTTCCGCCTGAGGTATTCGACACTCTTCATGATGTGCTCAAAGACAACGGTGCACAAGTGCACCTCTGCTGCGACCCTTCCCGCAATGGCCCCAATGATTACCATGTCATTTCTTGCAGTAAACATGAGAAGTTTGAGGATCTTAAAGCCAAAGGCTGCAAATTGCTTGGACCCAGATGTGTTCTTTCATGTGCTAAAGAACTTAAGCCTTTGCCTAAAGTTGGATTTACGTGTTGCCTTGCCATGGATGGTGTCAAAATACTTGCATCTGGCTTCGATACCAATGAGAAGCTTAAGATAGAAGAGATTGTGACTGAAATGGGTGGTCTTCTACATACTAAAGCATCACTGGATTTGAACTTTGTCATTGTGAAAAATGTTTTGGCTGCAAAATACAAGTGGGCTTTGAATATACTGAAGAAACCAATAGTTACTTATGAATGGTTAAAGCAATGCTCAGAGGAGCATCGTGTTGTTCCTCAGGAGTCATACAAGGTCCTTCCTTTCTCCGGGCTGACGATTTGTGTTACTGGGATTCCAGCAGATAAACGCAAAGAGATTGAGAAGCTTACTTTACAAAATGGTGGAAAGTACTCTGCAGAATTGACAAAGAAGTGCACTCATTTGATTTCTGATATATCCTTCCAGTGGTCCTCTACTTTTAATGAGGCTCCTGAAGGTGACAAATATAAGGTAGCAAAACGCTGGGGCCATATTTATACTGTGACGAGGAAATGGTTTGATCAATCTATTGCTCGAAGAGCATGTCTGAACGAGGAGTCCTACCCAGTTCAGAATGGACCTGTATCTTCACAGAAAGTGATTAAGGACATAGATGTACAGCATAGCCAAGAAACGGATATTAGTAAATTTCAATCTGGAGTATCCTCAGCTGTTACAGATCCAAACATGCCGGTTTCTTCTTATGCTGAGTTTGTAGATAAAGACCAAGAAGCTACATGTTCAGAATACACGTCTTCTTTTACAAATGTTGCTACATTTGTCAAAGATACAAATGCTGAAGCACCTCGAGGAAAGCCCAGTGATGAATTGAACCTTGATGGCCCTGTTGCCAATGATTCTGAATCTGATGATAATGATCTGTACTTATCCGAGTGCAAAATCTTTCTTGTTGGCTTTGAAGCTTCTGACATGCGGAAACTAGTTAATATGGTGCGGAAAGGTGGAGGTTCCCGATATATGTCTTTAAATGCCAAGCTGACACACATAGTTGTTGGAAACCCTTCAGAATCGGAAAAGAAGGATGTAAGGAGTCTTGCTGCTTTAGGTGTCATTTATGTTGTTAAAACGTCCTGGCTTGAAGATTGTAACCGTGAAAAGAAAGAAGTCCCTGTTCTAAGGAGACACATTGCATCTGATCTACTTGTTCCAAAAGGAAGCATTGTCAAAGGAGCATCAACAAGCATGTCCATGGTTCAAGGTAAAAGCTGTGGTTTTCCTAAAAGCTTGCAGAGTGCTCAGGTGGTGGGAGTTATGGCCTCTGGAGGTGTAAAGCCAGTATCTTTGGGGAAAGATAAACTGGATGTGGGTACAAGTGTTCACTCATTCAGTAAAGCAATGGGGCAAAATCAACATGCTTCTAATAAGATGACAGCTCCAAAGATGACAGTGACACAACGTGATCCCAGTGTAGAATATGTTAAGTCCACAACAGTTTTCAAAGGGAAAATATTTTGTTTCTCGGATTTATTTCCTGAAGAAAGGAGAGCTGAGGTCATCGAATGGATACATCAAGGGGGAGGACAAGTAATAAGTGGGAAAGTAAAACATGGTGTCCATTTTACTGTTGAATGTCATGGTGTAACACCCATGATGACAGCAAATTCCCAAAGTACATATGTTTCGAGTCATTGGATACGATCTTGCTTACAGGCCGGATACCTAATGGATGTTGGCAGTCATATTCTTTATTCTCCACTTTCCTGTCGCGTTCCCTTGCCCGGGTTTGAAAGCTTTCGGTTTTGTGTTTCGCAATATGAGGAAAAAGAAAGAATTCTACTACGGAACTTGTGTTTTGTTTTGGGAGCTAAATTTGTGGAGAAGTTAACGAAGAAGGTCAGCCATTTGTTGTGTAAATTCAAGAATGGGCCCAAGTATGATGCTGCTTGTAAATGGGGGATCCGGTCAGTTACTGCCGAATGGCTGTTTGAATGTGTCAAACAGAATGGAGTTGTTGCCATAGACCATTTTTTACCAAAAGAAGTCACTGCTCAAGATCGGGAGGCAGGAATTTGTACTGTGAGTCAATTTCCTACTCAGGCCGTTCAAATGATAAGTGATCTGACGTCCCAGTATCCGAATCAATCACAAAATTCGACAGACAAAGTAAATAGAGGCATATATAGCGGACTTGCCAGTAATGGGACCGATTTAAAAATATCAAATATTCAGAGCAAAAAGGCAAGGCTTGTGGAAGATCCTGATAAGGTGTCTGCTGCAGTATATTCAGGTATTCATCATGTCAATGGAATGAATTTTTCTGAAGACAATACTGTAAAAGATGCTGGACAGGTTCCTCATGCTGTTCCTGATGTTGCTGCTGCAATTGAGGACTTGTTAGAGGAGACAAGCAAGATGCATGATCAGAGGTCACCAGGGAGTACAGGGCGTGAGAGAAGTATCTATTCATCTGGTTGTACTATCGTTTGTGAAGAGAATTCCAATCCTAATGCTGTGTTTGGATTGTCAAAACACTGGTTAAACAGAGGTGACAGAAAAGATGATGATGGTGAGGCTTCTCGAGACAGACGAGCTGAAACTTATGATCGATTTAGCGAAACACAAACAGAATCTCAGGTTGTTGGTTATGAAGAGGATTTGTCTGGAAGGCAAATGCTTATTGACAGAGTTCGAACTCGAAGTAGCGCACAATAA 2949 0.4154 MLKAKVFNGANVFMSRNLVPPEVFDTLHDVLKDNGAQVHLCCDPSRNGPNDYHVISCSKHEKFEDLKAKGCKLLGPRCVLSCAKELKPLPKVGFTCCLAMDGVKILASGFDTNEKLKIEEIVTEMGGLLHTKASLDLNFVIVKNVLAAKYKWALNILKKPIVTYEWLKQCSEEHRVVPQESYKVLPFSGLTICVTGIPADKRKEIEKLTLQNGGKYSAELTKKCTHLISDISFQWSSTFNEAPEGDKYKVAKRWGHIYTVTRKWFDQSIARRACLNEESYPVQNGPVSSQKVIKDIDVQHSQETDISKFQSGVSSAVTDPNMPVSSYAEFVDKDQEATCSEYTSSFTNVATFVKDTNAEAPRGKPSDELNLDGPVANDSESDDNDLYLSECKIFLVGFEASDMRKLVNMVRKGGGSRYMSLNAKLTHIVVGNPSESEKKDVRSLAALGVIYVVKTSWLEDCNREKKEVPVLRRHIASDLLVPKGSIVKGASTSMSMVQGKSCGFPKSLQSAQVVGVMASGGVKPVSLGKDKLDVGTSVHSFSKAMGQNQHASNKMTAPKMTVTQRDPSVEYVKSTTVFKGKIFCFSDLFPEERRAEVIEWIHQGGGQVISGKVKHGVHFTVECHGVTPMMTANSQSTYVSSHWIRSCLQAGYLMDVGSHILYSPLSCRVPLPGFESFRFCVSQYEEKERILLRNLCFVLGAKFVEKLTKKVSHLLCKFKNGPKYDAACKWGIRSVTAEWLFECVKQNGVVAIDHFLPKEVTAQDREAGICTVSQFPTQAVQMISDLTSQYPNQSQNSTDKVNRGIYSGLASNGTDLKISNIQSKKARLVEDPDKVSAAVYSGIHHVNGMNFSEDNTVKDAGQVPHAVPDVAAAIEDLLEETSKMHDQRSPGSTGRERSIYSSGCTIVCEENSNPNAVFGLSKHWLNRGDRKDDDGEASRDRRAETYDRFSETQTESQVVGYEEDLSGRQMLIDRVRTRSSAQ 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g00196 982 SMART BRCT_7 385 465 IPR001357 -
Adu04g00196 982 SMART BRCT_7 575 651 IPR001357 -
Adu04g00196 982 SMART BRCT_7 97 174 IPR001357 -
Adu04g00196 982 SMART BRCT_7 184 272 IPR001357 -
Adu04g00196 982 SMART BRCT_7 671 747 IPR001357 -
Adu04g00196 982 SMART BRCT_7 4 86 IPR001357 -
Adu04g00196 982 ProSiteProfiles BRCT domain profile. 182 282 IPR001357 -
Adu04g00196 982 SUPERFAMILY BRCT domain 385 469 IPR036420 -
Adu04g00196 982 Gene3D BRCT domain 186 283 IPR036420 -
Adu04g00196 982 Gene3D BRCT domain 97 185 IPR036420 -
Adu04g00196 982 CDD BRCT 103 170 - -
Adu04g00196 982 Gene3D BRCT domain 571 666 IPR036420 -
Adu04g00196 982 CDD BRCT_TopBP1_rpt2_like 186 272 - -
Adu04g00196 982 MobiDBLite consensus disorder prediction 925 962 - -
Adu04g00196 982 SUPERFAMILY BRCT domain 670 758 IPR036420 -
Adu04g00196 982 SUPERFAMILY BRCT domain 186 283 IPR036420 -
Adu04g00196 982 ProSiteProfiles BRCT domain profile. 383 475 IPR001357 -
Adu04g00196 982 ProSiteProfiles BRCT domain profile. 573 661 IPR001357 -
Adu04g00196 982 SUPERFAMILY BRCT domain 59 183 IPR036420 -
Adu04g00196 982 Gene3D BRCT domain 375 472 IPR036420 -
Adu04g00196 982 SUPERFAMILY BRCT domain 576 663 IPR036420 -
Adu04g00196 982 MobiDBLite consensus disorder prediction 357 382 - -
Adu04g00196 982 Pfam twin BRCT domain 678 739 IPR001357 -
Adu04g00196 982 Pfam twin BRCT domain 190 264 IPR001357 -
Adu04g00196 982 CDD BRCT_TopBP1_rpt2_like 672 747 - -
Adu04g00196 982 Gene3D BRCT domain 37 94 IPR036420 -
Adu04g00196 982 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 7 970 - -
Adu04g00196 982 Gene3D BRCT domain 669 761 IPR036420 -
Adu04g00196 982 MobiDBLite consensus disorder prediction 925 949 - -
Adu04g00196 982 ProSiteProfiles BRCT domain profile. 100 184 IPR001357 -
Adu04g00196 982 Pfam BRCA1 C Terminus (BRCT) domain 100 170 IPR001357 -
Adu04g00196 982 Pfam BRCA1 C Terminus (BRCT) domain 385 461 IPR001357 -
Adu04g00196 982 ProSiteProfiles BRCT domain profile. 674 757 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g00196 Adu-Chr4 2509221 2517260 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g00196 1 980 Core DNA Replication Machinery Family AT1G77320 49.523 0.0 926
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g00196 K10728 - gmx:100804966 1305.43