Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g00117 ATGGAGTGGAATGCTAAATCTCTTGGGCAATGGGACTGGGAGAACTTATACTCATTCAATACAAAACCAACTGAAAGTTCCAAGTTGCAACCAACGGATTGGAGCATGGAAGCAGATGGAGAAATCAATGTTGGGCTGATATATCCGTCCGGTGGTAGTGCTTGTTCCGGTTCTGAACTGATTCATGCTTCATCTAGGAGCTCAAAATCAGCTTCCATGAATTCATCATCAAATGGGGATAGCAAAGCATCCACAACCATGTTCACTTTCGAGCGTTCTCAAGACGACTCAACTGGTAAGAAAGAATTGTCAAAGGAAGAGCCAGTTGAAAATTCTCCAGCACCAGAGCCCTCTTCTGCCTCTGGTGAACCACTGCTCACTTTAAAGCTTGGTAAACGGTTGTACTTTGAGGATGTTTGTGCAGGAAGTGATTCCAAGAAACCATCTTCCATTGATGTTCCTATTTCATCTTCAAATACTGGAAAGAAATGTAAGGCCAATAGTCAGAATCTACAACACCCAAGCTGCCAGGTTGAAGGCTGTGGTCTAGACCTCTCATCTGCTAAAGATTACCATCGCAAACACAGGGTTTGCGAAAGCCATTCCAAGTCCCCTAGGGTACTTATAGCTGGCTTTGAACGTCGATTTTGCCAGCAATGCAGCAGGTTCCACGGTCTATCAGAGTTTGATGACAAAAAAAGAAGCTGTAGACGGCGTCTTTCAGATCACAATGCAAGGCGTCGCAAACCTCAGCCTGAAGCAGTCCAATTAAATACATCTGCTCTGTCTTCATCACCCTATGATGCAAGGCAACTAATGAATCCATTTGTTTATTCAAGAGCTGCGACGAATATAGGTTGGCAAGATATTCAAAACAGCAGGCTACCCCAGACAAAAGATTTCCTGATGAGGCCTGCGAAAGCCTTCGACAAGATACCAAGTATTGTCACTATGCTTTCTGATGATTTTAGTGACCTTGCATCCAAAGGCATGGCAACCAGTGGGAAAGAAGATCCTATTAGCTCGTCGGATCCCAACGCCACACAAGATGTCAGCCGTGCTCTCTCTCTTCTGTCAACCAATTCATGGTCTACATATGCTATGACTCCCCGTTTCCCTCTCCCTTCATCACAATATTCTCACCTTGATCAACAACCAGCCAATCCTAACATGTGTATCCCATTCTCAGATTGTGATAATAGCAATCGCTTCCAAGAGTTTCAGATGTTTAGTGCTCCACCCTATGATTCAGGCTATCCTTGCAACCAGCTGGACTAA 1278 0.4444 MEWNAKSLGQWDWENLYSFNTKPTESSKLQPTDWSMEADGEINVGLIYPSGGSACSGSELIHASSRSSKSASMNSSSNGDSKASTTMFTFERSQDDSTGKKELSKEEPVENSPAPEPSSASGEPLLTLKLGKRLYFEDVCAGSDSKKPSSIDVPISSSNTGKKCKANSQNLQHPSCQVEGCGLDLSSAKDYHRKHRVCESHSKSPRVLIAGFERRFCQQCSRFHGLSEFDDKKRSCRRRLSDHNARRRKPQPEAVQLNTSALSSSPYDARQLMNPFVYSRAATNIGWQDIQNSRLPQTKDFLMRPAKAFDKIPSIVTMLSDDFSDLASKGMATSGKEDPISSSDPNATQDVSRALSLLSTNSWSTYAMTPRFPLPSSQYSHLDQQPANPNMCIPFSDCDNSNRFQEFQMFSAPPYDSGYPCNQLD 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g00117 425 Gene3D - 166 237 IPR036893 GO:0003677|GO:0005634
Adu04g00117 425 MobiDBLite consensus disorder prediction 94 109 - -
Adu04g00117 425 MobiDBLite consensus disorder prediction 57 93 - -
Adu04g00117 425 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 20 423 - -
Adu04g00117 425 MobiDBLite consensus disorder prediction 142 167 - -
Adu04g00117 425 Pfam SBP domain 176 249 IPR004333 GO:0003677
Adu04g00117 425 ProSiteProfiles Zinc finger SBP-type profile. 173 250 IPR004333 GO:0003677
Adu04g00117 425 MobiDBLite consensus disorder prediction 149 167 - -
Adu04g00117 425 MobiDBLite consensus disorder prediction 240 261 - -
Adu04g00117 425 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 20 423 IPR044817 GO:0003677
Adu04g00117 425 SUPERFAMILY SBT domain 174 255 IPR036893 GO:0003677|GO:0005634
Adu04g00117 425 MobiDBLite consensus disorder prediction 56 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g00117 Adu-Chr4 1360625 1365558 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g00117 1 371 SBP-box Gene Family AT5G43270 42.386 3.65e-65 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Adu04g00117 SBP 4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g00117 - - gmx:100781289 565.844