Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g00055 ATGGGAAACACATGTGCAAGTGCCAAACCCGTTGCTCATGTCTCTTCTTCTAACTTTTCCGGAAGTAAGAAGCCTGTAAGTAAGATGAATAGGAGTCCAAACTCTAACATGCCAAAAGGCGATTCGAAAATATCCGAATCAAATGCTGGAAAATTGATCTCCACTAACCTTAAGTCCTTCAGCTTCAATGATCTAAAGGTGGCCACTAAGAACTTCCGGCGAGAAAATTTAATTGGAGAGGGAGGGTTCGGGCGTGTGTTCAAGGGATGGATTGATGGGAACAACTATGCTCCAACGAAACCGGGGAGTGGGATTGTAGTGGCCATTAAGAGTCTTAAGCCAGAAAGCTTTCAAGGTCACAAGGAATGGCTTGCAGAAGTCAGTTATCTCGGGCAGCTTCACCATGAAAATCTGGTGAAACTTATTGGTTATTGCTTGGAGGGTAAAAACAGACTTCTTGTTTATGAGTTTATGCAGAAAGGAAGCTTGGAGAATCATTTATTCAAAAAAGGTGTTCAACCTATACCCTGGGCCACGCGGATCAATATTGCAGTTGGTGTTGCAAGAGGACTATCATTTTTACATTCCTTGGATGCGAATGTCATATTTCGTGATTTAAAGGCTTCCAATATCCTACTTGATTCAGATTTTAATGCAAAACTTTCGGATTTTGGCTTGGCAAGAGATGGTCCTACTGGAGATAATACTCATGTTTCAACCAGAGTTATTGGAACTCAAGGTTATGCTGCACCTGAATATGTTGCTACAGGTCATTTGACCCCAAGAAGCGATGTGTACAGCTTTGGCGTTGTCTTGTTAGAGTTATTAACAGGGAGGCGTGCACTAGAAGATGATAGGCCTGGATTTTCAGAAGAAACTCTTGTGGATTGGGCAAGGCCCTTCCTGAGTGATAACAGAAGAGTACTGAGAATCATGGATACTCGGTTGGGTGGTCAATATTCCAAGAAAGGAGCACAAGCTATGGCCTCACTCGCCTTGCAATGCCTAAACACTGATCCAAAACTTAGACCACCCATGGTAGATGCTCTTGCAACACTAGAAGGACTCAATTCGTCGAATTCAATGCCGAGGACGCCACGATTAGAAAAAGAAAAACACCGGCAATTTCAAGGCACATTGAGAGTCATGAGTAGCATGACGAACATGGGTGATGGTCGGAAAGTGTCCAAAAGTCGCCAATCGTCATCATCAGATGAGGAGGCTAAGACGGGAGGAGAAGGTCATTTAAAAAAAGGCCCTTGGACATCAATAGAGGATGCAATTCTAGTAGACTACGTTACCAAGCATGGAGAGGGGAATTGGAATGCTGTTCAAAGGAATTCGGGACTTGCCCGATGCGGTAAAAGCTGTCGATTACGATGGGCAAATCATTTGAGACCAGATTTGAAAAAGGGAGCATTCACTGAAGAAGAAGAGCGCAGGATCATTGAGCTTCATGCTAAGATGGGAAACAAATGGGCACGGATGGCTGCAGAGTTGCCTGGGCGTACAGACAATGAGATAAAGAACTATTGGAACACAAGAATTAAAAGAATGCAGCGAGCTGGTCTACCAATCTACCCTCCTGATGTATGCCTGCGGGTGATGCATGGCAATCAAGAAAGTGTAAATGTTGGTACCTTGAGAGATGAAGCCAACCAGCATGATGATCTCTCACAGACAGATACTCTGGATATACCGGAGTTAGATTTCAAACTAGTCAAACTCTGTCCAGGTTTATCTTATGGAACATCAATTTGTGATATACCTGAAAGTAGCATGGTTGAAATGAGTTCGGACTCGTCCCATGGTTACAATCACATGTTTCCTGTGATGCCTCCTTCGAAACGCCTTCGAGAATCAGACATGCAATATGGATATTTGGACAGTTGTATCAGTGATTCTGTCCCAATATTTGAACAGTATGGTGATTACACGTGTGATAAAATTTCCGACCATACTCAATTGTCTTCTCCATGTGATCCTATTCTAAACACCAGCGATCAGTTTCATGGTGATGACACATATGGTAGCCATGCTCCCTTAAATGGCAATACTTCTTCTTCTTCTGTGCCCCTACCCGGGGCCATGAAGTTGGAGCTCCCTTCACTCCAATATTTTGAAACTCAACACGGTATCTGGGGCACACCTGCTTCCCCACTTCCCTCACTTGAGTCCGTTGACACGATGATCCAGTCTCCGCCGGCCAAGCCGTCTCCTTCGGATCCTGTTTCTCCAGAGAGGAGCGGTTTGCTGGAAGCAATAATCTACCAGCCCAAGCAGTTACAAGTGGCCAATAACAATTCACTTCAAGCAACACCCAATGATTGTGTTCGCAAAGAAGTTAAGATTTCAACCATGAAGTGTAAGCCAGAATGCGATGAACAAGGCGGGCCGCATTTCCCCTTAGGTCAGTCTGCTGCTTCAGTTGCAACCAATTATACTACTTCCATTAGCATGTGCTTGGTGGATGCACCCCAATCAGTTGAAACTATTCAGGATCATAATATTAAGCAAGAACTAGGCACACAGTACCCAGCTTACGTGTCTGGGAAGAAAGAAAACTGGAATCAAATAGACTTCACACGGCCCGATGCTTTACTCGACTTGGGTTGGTTTGGGAGTGGCATCGATTGCGACGATTATGATGGCGATCAGTTTCTTTTCAAAGATGCTTTAAGCCCATTTCTTGGTCAAGATCCGGATGGTCCCTTATGTTCTCCATTCAGTGCCACCCTAGCCATGATTGATTTGATGCTAAAGTGTCAATTGGGAATGCTAGGTGAAAGCTTGCATTTGGAACTATTGTATTATGCTGAATGCTGTCCCCTCCATCAACAACACCATCACCACCCTACATTGCCACTAACCACAAAAACATTAGAACCATCACTGGCCATCGAATTGGAAACACCGCACCACACCGTGACCACGAAGCACAATAACAACAATAGATTGAAATAA 2964 0.442 MGNTCASAKPVAHVSSSNFSGSKKPVSKMNRSPNSNMPKGDSKISESNAGKLISTNLKSFSFNDLKVATKNFRRENLIGEGGFGRVFKGWIDGNNYAPTKPGSGIVVAIKSLKPESFQGHKEWLAEVSYLGQLHHENLVKLIGYCLEGKNRLLVYEFMQKGSLENHLFKKGVQPIPWATRINIAVGVARGLSFLHSLDANVIFRDLKASNILLDSDFNAKLSDFGLARDGPTGDNTHVSTRVIGTQGYAAPEYVATGHLTPRSDVYSFGVVLLELLTGRRALEDDRPGFSEETLVDWARPFLSDNRRVLRIMDTRLGGQYSKKGAQAMASLALQCLNTDPKLRPPMVDALATLEGLNSSNSMPRTPRLEKEKHRQFQGTLRVMSSMTNMGDGRKVSKSRQSSSSDEEAKTGGEGHLKKGPWTSIEDAILVDYVTKHGEGNWNAVQRNSGLARCGKSCRLRWANHLRPDLKKGAFTEEEERRIIELHAKMGNKWARMAAELPGRTDNEIKNYWNTRIKRMQRAGLPIYPPDVCLRVMHGNQESVNVGTLRDEANQHDDLSQTDTLDIPELDFKLVKLCPGLSYGTSICDIPESSMVEMSSDSSHGYNHMFPVMPPSKRLRESDMQYGYLDSCISDSVPIFEQYGDYTCDKISDHTQLSSPCDPILNTSDQFHGDDTYGSHAPLNGNTSSSSVPLPGAMKLELPSLQYFETQHGIWGTPASPLPSLESVDTMIQSPPAKPSPSDPVSPERSGLLEAIIYQPKQLQVANNNSLQATPNDCVRKEVKISTMKCKPECDEQGGPHFPLGQSAASVATNYTTSISMCLVDAPQSVETIQDHNIKQELGTQYPAYVSGKKENWNQIDFTRPDALLDLGWFGSGIDCDDYDGDQFLFKDALSPFLGQDPDGPLCSPFSATLAMIDLMLKCQLGMLGESLHLELLYYAECCPLHQQHHHHPTLPLTTKTLEPSLAIELETPHHTVTTKHNNNNRLK 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g00055 987 MobiDBLite consensus disorder prediction 398 414 - -
Adu04g00055 987 SUPERFAMILY Protein kinase-like (PK-like) 51 362 IPR011009 -
Adu04g00055 987 PANTHER TYROSINE KINASE FAMILY PROTEIN 20 375 - -
Adu04g00055 987 CDD SANT 420 465 IPR001005 -
Adu04g00055 987 Gene3D Transferase(Phosphotransferase) domain 1 158 379 - -
Adu04g00055 987 Gene3D Phosphorylase Kinase; domain 1 47 157 - -
Adu04g00055 987 CDD SANT 485 514 IPR001005 -
Adu04g00055 987 MobiDBLite consensus disorder prediction 669 694 - -
Adu04g00055 987 ProSiteProfiles Myb-like domain profile. 413 465 IPR001005 -
Adu04g00055 987 ProSiteProfiles Protein kinase domain profile. 72 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Adu04g00055 987 SUPERFAMILY Homeodomain-like 416 512 IPR009057 -
Adu04g00055 987 CDD STKc_IRAK 78 356 - -
Adu04g00055 987 MobiDBLite consensus disorder prediction 669 693 - -
Adu04g00055 987 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 466 520 IPR017930 -
Adu04g00055 987 Pfam Protein tyrosine and serine/threonine kinase 75 349 IPR001245 GO:0004672|GO:0006468
Adu04g00055 987 SMART serkin_6 72 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Adu04g00055 987 Gene3D - 473 543 - -
Adu04g00055 987 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 416 465 IPR017930 -
Adu04g00055 987 ProSitePatterns Protein kinases ATP-binding region signature. 78 110 IPR017441 GO:0005524
Adu04g00055 987 MobiDBLite consensus disorder prediction 381 419 - -
Adu04g00055 987 Pfam Myb-like DNA-binding domain 471 514 IPR001005 -
Adu04g00055 987 Pfam Myb-like DNA-binding domain 418 465 IPR001005 -
Adu04g00055 987 MobiDBLite consensus disorder prediction 1 46 - -
Adu04g00055 987 ProSiteProfiles Myb-like domain profile. 466 516 IPR001005 -
Adu04g00055 987 MobiDBLite consensus disorder prediction 724 747 - -
Adu04g00055 987 Gene3D - 417 470 - -
Adu04g00055 987 PANTHER OS01G0588500 PROTEIN-RELATED 20 375 - -
Adu04g00055 987 MobiDBLite consensus disorder prediction 381 397 - -
Adu04g00055 987 SMART sant 417 467 IPR001005 -
Adu04g00055 987 SMART sant 470 518 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g00055 Adu-Chr4 561518 580611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g00055 31 359 Glycoside Hydrolase AT3G07070 48.673 1.53e-95 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Adu04g00055 PK_Tyr_Ser-Thr 9e-48 CL0016
TF MYB Adu04g00055 PK_Tyr_Ser-Thr 9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g00055 - K09422 gmx:100800658 640.188