Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g00023 ATGAAACTCACTGTTAAGACTTTGAAAGGCAGCCATTTCGAAATTAGGGTTCAGCCATCCGACACTATTATGGCTGTCAAGAAGAATATAGAAGATGTGCAAGGCAAAGATAATTACCCATGTGGACAACAGTTGCTTATTCACAATGGCAAGGTTTTGAAAGATGAAACAACATTAGCAGAGAACAAGGTCTCTGAGGATGGTTTTCTTGTTGTTATGCTTAGCAAGGTAGTTTATTCCTTCATGAAAACTTTTTCAAATTATAACACCCTTCCTTCCTCAAAACCTGCCAGCAATCCACCTGCAGCTGTATCAACCTCAAATTCCACGCCTGCTCCTGAACCTCCTGCACAAACTCAACATTTGTCATTTTCCACTTTCTTGTTTATAAAGCCTACTCACAAGCTTTCCTACGTCATTTTTTGCAGCGTGTCTGCAGATACTTATGGTCAGGCTGCTTCAAATTTAGTTGGTGGTAGTAATCTTGAGCAGACTATTCAACAAATTATGGACATGGGAGGTGGCAACTGGGACAGAGATACAGTTACTCGTGCTCTTCGGGCAGCTTACAATAATCCAGAGCGTGCTATAGACTATTTGTACTCTGGTATCCCCGAAGCAGCAGAAGTTGCTGTACCAGTTCCTCAATTCCCAGGTAGTCAGACAACTGAAACAGCTGGGGTCACTGCTGGAGCAGTTCCTGGACTACCTAACTCATCTCCCTTAAATATGTTTCCACAGGAGACAATTTCTGGTGCTGGTCCTGGACTAGGATCTCTTGACTTCCTCAGAAACAATCCCCAGTTTCAAGCATTGCGTTCAATGGTGCAATCAAATCCACAAATTTTACAGCCTGTACTTCAAGAACTTGGAAAGCAGAATCCCAATCTTTTAAGACTCATTCAAGAACATCATGCTGAGTTTCTACAGTTGATAAATGAACCTGTTGAGGGATCTGAAGGTGATATATTTGACCAGCCTGAGCAGGACATGCCTCATGCCATCAATGTGACTCCAGCTGAGCAGGAGGCAATTGCAAGGCTTGAGGCATTGGGATTTGATAGAGCCTCGGTCATAGAGGCGTTTTTGGCATGTGACCGGGATGAACAATTGGCAGCGAATTACTTATTGGAGAATGCTGGAGATTTTGAGGATTAA 1158 0.4301 MKLTVKTLKGSHFEIRVQPSDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLAENKVSEDGFLVVMLSKVVYSFMKTFSNYNTLPSSKPASNPPAAVSTSNSTPAPEPPAQTQHLSFSTFLFIKPTHKLSYVIFCSVSADTYGQAASNLVGGSNLEQTIQQIMDMGGGNWDRDTVTRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQFPGSQTTETAGVTAGAVPGLPNSSPLNMFPQETISGAGPGLGSLDFLRNNPQFQALRSMVQSNPQILQPVLQELGKQNPNLLRLIQEHHAEFLQLINEPVEGSEGDIFDQPEQDMPHAINVTPAEQEAIARLEALGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g00023 385 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Adu04g00023 385 SUPERFAMILY UBA-like 158 210 IPR009060 GO:0005515
Adu04g00023 385 SMART uba_6 341 378 IPR015940 -
Adu04g00023 385 SMART uba_6 162 202 IPR015940 -
Adu04g00023 385 SMART ubq_7 1 75 IPR000626 GO:0005515
Adu04g00023 385 Pfam UBA/TS-N domain 162 200 IPR015940 -
Adu04g00023 385 Pfam UBA/TS-N domain 341 376 IPR015940 -
Adu04g00023 385 SMART CBM 258 301 IPR006636 -
Adu04g00023 385 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 339 379 IPR015940 -
Adu04g00023 385 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 384 - -
Adu04g00023 385 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Adu04g00023 385 PANTHER UBIQUITIN RECEPTOR RAD23A-RELATED 1 384 - -
Adu04g00023 385 PRINTS DNA repair protein Rad23 signature 352 366 IPR004806 GO:0006289
Adu04g00023 385 PRINTS DNA repair protein Rad23 signature 286 308 IPR004806 GO:0006289
Adu04g00023 385 PRINTS DNA repair protein Rad23 signature 335 351 IPR004806 GO:0006289
Adu04g00023 385 PRINTS DNA repair protein Rad23 signature 367 382 IPR004806 GO:0006289
Adu04g00023 385 SUPERFAMILY XPC-binding domain 257 323 IPR036353 GO:0003684|GO:0006289|GO:0043161
Adu04g00023 385 Gene3D - 250 316 IPR036353 GO:0003684|GO:0006289|GO:0043161
Adu04g00023 385 Pfam XPC-binding domain 260 315 IPR015360 GO:0003684|GO:0006289|GO:0043161
Adu04g00023 385 Gene3D - 155 205 - -
Adu04g00023 385 MobiDBLite consensus disorder prediction 90 118 - -
Adu04g00023 385 SUPERFAMILY UBA-like 320 382 IPR009060 GO:0005515
Adu04g00023 385 TIGRFAM rad23: UV excision repair protein Rad23 1 384 IPR004806 GO:0006289
Adu04g00023 385 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 160 203 IPR015940 -
Adu04g00023 385 Gene3D - 1 77 - -
Adu04g00023 385 CDD UBA1_Rad23_plant 156 205 - -
Adu04g00023 385 Gene3D - 332 380 - -
Adu04g00023 385 SUPERFAMILY Ubiquitin-like 1 78 IPR029071 -
Adu04g00023 385 CDD Ubl_Rad23 1 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g00023 Adu-Chr4 252082 255986 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g00023 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 40.541 1.35e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g00023 K10839 - gmx:100819019 599.742