LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu03g04709	ATGCTTCCAGATGATGAGGAGGACCTTTTAGCTGATTTTGACCTAAGTGGTTTGCCAAACTCTCTTGAGGATTTGGAGGAGTATGATGTTTTTGGTAGTGGTGGAGGTATGGAACTGGAAGCTGATCCTCAGGAAAGTCTTAATGTGGGTGTGTCAAAATTAAGCTTCTCTGATGGTCATGCTGCCAATGGTTTGCCCTATAATTCTTTTCTTAATGGTGTGGGGATTGTTGCTGGAGAACATCCATATGGAGAGCATCCTTCTCGGACATTATTTGTTCGAAATATTAATAATAATGTGGAGGATTCAGAGTTGAGAGCTCTTTTCGAGCAATATGGTCACATTAGGACTCTATATACTGCATGTAAACATCGTGGGTTTGTTATGGTATCCTATTATGACATCCGTGCTGCTCGAACAGCCATGCACGCATTACAAAACAAACCTTTACGACGCCGGAAACTTGACATTCACTTCTCAATACCAAAGGATAATCCATCTGACAAGGACATCAACCAAGGAACCTTGGTAGTTTTCAATTTGGACCCATCTGTTTCGAATGAGGACCTCCGTACAATATTTGGGGCATATGGGGAGGTCAAAGAGATACGGGAAACGTCTCACAAAGGCCATCACAAGTTTATTGAATTTTATGATGTGAGGGCTGCAGAAGCAGCACTAAAATCATTAAACAGGAGTAACATAGCTGGGAGGCGAATAAAGGTGGAGCTTAGCCGGCCTGGCAGAACTCGTCGAAATTTAGTGCTTCAAACAAATCAAGAGCTTGATCATGATGAAAAGCTAAGTTTCCGACATCAGATGGGTTCACCTGTGGCCAATTCTCCACCCGGTTACTGGTTGCGGTTCAACAGCACTGTTGAAAATAACTCATTTCAAACTATAAGCGATTCTCCTGGTTCTGGGATCATGAGTCCATCAATAGGAAACCATTTAGCTGGATTAGCTTCTGTTTTGCACCCTCCACTATCCAATGCCATGAAGGGTGTAGCTATTGGGAAAGATTTAGCAGGGAGTCAGCATGCAGAGCATATATTTGCTAGTAGTAATTCATCGCATGGAGAGACATTTCAATCTCATTCTCTTCCAGAACCAAAATTCATCCCATATAGTGGAGCTTTGTCTTCTTTTGGTTCATCTCCTTCAAATGGATCCTCGGTGGAAACCTTGTCAGGGTCACAATTTTTATGGGGAAGTCCGAACTTGTACTCACAGGACATCAAACCTTCAGCTTGGCCAACACCATCTGTGAGGCATTCATTTACAGCAAATGGAAATAGCCATGCCTTCCAAAACCCTGCTCAAGAGAGTTCTTTTATTGGTTTGTCCCAGAATCGTCACCATAATCATGTTGGCTCTGCTCCATCAGGTTTTCCTTTTGAGAGAAACTTTGGAGTCCTTTCGAAGTCACCTGAAACGTCGTTCGTGAACCATGTTGGTTATGGAGGCATAGGTCTGGGTCACAGTAAGGGGAATTACATGGTTAATATGGGTGAATCTGTTAATGCCGGGATCACTATACCAAGAAATATGTCTGAACATGGTTCGCCAAACATTGGAATGAGATCATCTCCCAGACTTAGTCTTGTGTTTTCAGGTAATGGTCCATACCCAGGATTGCCACCTACTACTACTACTACTACTACTACTACTTCAGTGTTTGGTTTCGTGGACCCTGGGCGGAATAGGCGCATAGAGAACAATGGGGGCCAAGCTGATAGCAGCAAGAAGCAATTTCATCTTGACTTGGATAGGATTAAAAACAGTGAAGACAGAAGGACTACCTTAATGATAAAGAACATCCCAAATAAATACACCTCAAAAATGTTATTAGCTGCTATTGATGAAAAGCACAAGGGTACCTATGATTTTTTCTATCTACCAATCGACTTTAAGAATAAATGCAATGTGGGATACGCATTTATCAACATGCTGTCGGCATCACACATTATTCCATTCTATGAGACATTTAATGGGAAGAAGTGGGAGAAGTTTAATAGTGAAAAAGTTGCTTCCCTGGCATATGCACGAATCCAAGGAAAGGCTGCATTGGTGAACCATTTCCAGAATTCAAGTCTGATGAACGAAGATGAGCGGTGCCGCCCAGTCGTCTTCCATTCACAGGATCCTGAAGGTGGTGATAAGATCATACAAGATCATACAAGTGATTCGACCTCGGAGACAAAATAA	2208	0.4235	MLPDDEEDLLADFDLSGLPNSLEDLEEYDVFGSGGGMELEADPQESLNVGVSKLSFSDGHAANGLPYNSFLNGVGIVAGEHPYGEHPSRTLFVRNINNNVEDSELRALFEQYGHIRTLYTACKHRGFVMVSYYDIRAARTAMHALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRTIFGAYGEVKEIRETSHKGHHKFIEFYDVRAAEAALKSLNRSNIAGRRIKVELSRPGRTRRNLVLQTNQELDHDEKLSFRHQMGSPVANSPPGYWLRFNSTVENNSFQTISDSPGSGIMSPSIGNHLAGLASVLHPPLSNAMKGVAIGKDLAGSQHAEHIFASSNSSHGETFQSHSLPEPKFIPYSGALSSFGSSPSNGSSVETLSGSQFLWGSPNLYSQDIKPSAWPTPSVRHSFTANGNSHAFQNPAQESSFIGLSQNRHHNHVGSAPSGFPFERNFGVLSKSPETSFVNHVGYGGIGLGHSKGNYMVNMGESVNAGITIPRNMSEHGSPNIGMRSSPRLSLVFSGNGPYPGLPPTTTTTTTTTSVFGFVDPGRNRRIENNGGQADSSKKQFHLDLDRIKNSEDRRTTLMIKNIPNKYTSKMLLAAIDEKHKGTYDFFYLPIDFKNKCNVGYAFINMLSASHIIPFYETFNGKKWEKFNSEKVASLAYARIQGKAALVNHFQNSSLMNEDERCRPVVFHSQDPEGGDKIIQDHTSDSTSETK	735

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu03g04709	735	MobiDBLite	consensus disorder prediction	710	735	-	-
	Adu03g04709	735	PANTHER	RNA RECOGNITION MOTIF-CONTAINING	1	721	-	-
	Adu03g04709	735	CDD	RRM3_MEI2_like	602	687	IPR034454	-
	Adu03g04709	735	SMART	rrm1_1	175	243	IPR000504	GO:0003723
	Adu03g04709	735	SMART	rrm1_1	90	158	IPR000504	GO:0003723
	Adu03g04709	735	SMART	rrm1_1	601	677	IPR000504	GO:0003723
	Adu03g04709	735	CDD	RRM1_MEI2_like	88	164	IPR034453	-
	Adu03g04709	735	MobiDBLite	consensus disorder prediction	718	735	-	-
	Adu03g04709	735	Gene3D	-	173	271	IPR012677	-
	Adu03g04709	735	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	174	247	IPR000504	GO:0003723
	Adu03g04709	735	SUPERFAMILY	RNA-binding domain, RBD	86	248	IPR035979	GO:0003676
	Adu03g04709	735	Pfam	RNA recognition motif 2	599	695	IPR007201	-
	Adu03g04709	735	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	89	162	IPR000504	GO:0003723
	Adu03g04709	735	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	91	155	IPR000504	GO:0003723
	Adu03g04709	735	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	176	241	IPR000504	GO:0003723
	Adu03g04709	735	CDD	RRM2_MEI2_like	173	243	-	-
	Adu03g04709	735	PANTHER	PROTEIN MEI2-LIKE 2	1	721	-	-
	Adu03g04709	735	Gene3D	-	78	172	IPR012677	-
	Adu03g04709	735	SUPERFAMILY	RNA-binding domain, RBD	601	686	IPR035979	GO:0003676

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu03g04709	Adu-Chr3	136285723	136290689	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu03g04709	86	231	Eukaryotic Initiation Factors Gene Family	AT1G71770	28.846	1.88e-10	62.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu03g04709	-		-	gmx:100800877	1095.49