Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g04543 ATGAATTATTGGATTTTGAAAGCTTTCCAAAGGCAAGTTTTGCANNNNGAGTGGAATGCAAAATCTCCCTCACAATGGGAGTGGGAGCACCTGTTCTTCTCCAATGCAAAAGTAACCGAAAACCCCAAATTACAACCACCACCAGATTGGAGTGGTGAAGCAAATGGAGAAACCAATGTTGGGTTGTTGGACAATTCTGGTGGTAGTGGTTGCTCTGAGTCTGAGCTCATGAACCCATCTTCATCAAGAAGCTCGAAATCTGCTTCCATCAATTCATCTTCCAATAGGGATAGCAAAACATCTATCTTCACCTTAGAAAGTTCCCAAGATGATTCCAGTGGTAAAAAAGAAGAGCTGGTTGAAAACTCTCATTCGCATGAGGCCCCTCCTGGCTCTGGCGAACCGTTGCTTACTCTAAAGCTTGGTAAACGCTTGTATTTTGAGGATGTTTGTCCGGGAAGTGATGCCAAGAAGAACCAGTCTTCCTCGGGTGCTCCGATTCAAGCTGTGAGTAGTGGAAAGAAATCTAAGTCCAATGCTCAGAACATGCAATATCCATGCTGCCAGGTTGAAGGTTGTGGCCTTGACCTCTTGTCAGCTAAAGATTATCATCGCAAACATAGAGTTTGTGAAAATCATTCCAAATCTCCAAAGGTGGTTATTGCTGGTTTGGAACGTCGATTTTGCCAGCAATGTAGCAGGTTCCATGGTCTGTCAGAGTTTGATGAAAACAAAAGAAGCTGCAGACGGCGTCTTTCAGATCACAATGCACGGCGCCGGAAACCTCATCCTGAAACTGTCCAGTTAAATCCATCAGATTTGACTCCGTCGCCTTTTGCAGTTGGGAGGCAACAGATTAGCCCCTTCACTTGTACAACGAGCGGAGCCGCGAATACAGTTTGGCAAGACATGCGGCGGAGCAAGCAGCTCCCCCAGACGAAAGATTTTCTGTTGAAGGCTGTGAAAGGCAACAATGAGATACCAAGTATTGTGAGCATGGTCACAGAGGATAATTCCAAAGGCATTGCATTTGCAAGCAAGACTCTTATACTTTTAACAGATTGA 1065 0.4479 MNYWILKAFQRQVLXXEWNAKSPSQWEWEHLFFSNAKVTENPKLQPPPDWSGEANGETNVGLLDNSGGSGCSESELMNPSSSRSSKSASINSSSNRDSKTSIFTLESSQDDSSGKKEELVENSHSHEAPPGSGEPLLTLKLGKRLYFEDVCPGSDAKKNQSSSGAPIQAVSSGKKSKSNAQNMQYPCCQVEGCGLDLLSAKDYHRKHRVCENHSKSPKVVIAGLERRFCQQCSRFHGLSEFDENKRSCRRRLSDHNARRRKPHPETVQLNPSDLTPSPFAVGRQQISPFTCTTSGAANTVWQDMRRSKQLPQTKDFLLKAVKGNNEIPSIVSMVTEDNSKGIAFASKTLILLTD 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g04543 354 MobiDBLite consensus disorder prediction 39 137 - -
Adu03g04543 354 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 37 334 - -
Adu03g04543 354 Gene3D - 178 249 IPR036893 GO:0003677|GO:0005634
Adu03g04543 354 ProSiteProfiles Zinc finger SBP-type profile. 185 262 IPR004333 GO:0003677
Adu03g04543 354 MobiDBLite consensus disorder prediction 110 124 - -
Adu03g04543 354 MobiDBLite consensus disorder prediction 157 178 - -
Adu03g04543 354 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 37 334 IPR044817 GO:0003677
Adu03g04543 354 Pfam SBP domain 188 261 IPR004333 GO:0003677
Adu03g04543 354 MobiDBLite consensus disorder prediction 58 109 - -
Adu03g04543 354 SUPERFAMILY SBT domain 186 267 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g04543 Adu-Chr3 134795902 134798106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g04543 17 264 SBP-box Gene Family AT5G43270 49.012 1.69e-60 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Adu03g04543 SBP 2.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g04543 - - ahf:112792599 657.136