Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g04515 ATGGACTCCGATTCTGACTCTGACGGATCCCATGTCTCTGCAACTCCTCCACGACGAGCAACTCCATCACCGCCGCCACCACAACCTCCGCCGCCGCCACAACCACCTCGTGTTCCTTCCGGAAAATCTAGAATCAGAACCAAAACCTCGAGCTCCAAGAAGCGCCCTTCTGCACCCGATAAAACCCAATCCAAACACGATCCGCTACCCGAACCAAGCCACCAACTCCAAGACCCTTTCTCCCTCCCGACCGCTCTACCGTTTCAAATTCGTCGGTCCTCCGACTGTGACCCCGCACCCCCGTCCACTTCCCAGCCCCTCGAAACCGTCCCGGCGGGGTTCTTCTCCAAATCCGCTTCCTTCTCGAAGATCCGAAGACATTCTATAAGTTTTGAAGCTTCTGGAAACGAACCGCTACTCGATTCTACGTCCAATCTGGGCACCAATGTTGGACTTGATTATGCTCTAAAGGGGACATCCGGGAAGAGGCAGCATCCTAACCTGATAGGGGCAAATGCACCATTGCCAGCCGTGAAGCTGCGAAAATGTGGCGGGGAAGGGAACTTTGTGAAATTGAACTTGAGTGGTGGTGGTAAGAGGAGGAAGTTTATGAACAAGGGGTACAAGAAAAGTGGGAGATTTTCTGGCGGTAGAAGGTACACAAGAAGTAGAGGTAAAGTGGGACGTCAAGGGAAGGAGGATCAAGAGGAACTTGGCTTTGATGATGAAGAAGGGTTGGTTACAGAGAGTGGACAAAAGAAGCAAAAGCGGACTTGCAGAGCTAGTGAGGTTCAGTTGAAATTGGTGGACGAGGCAGTGTCTGCTGCTCAAGCTGAGCCTTCGGATGAGAATTTGGTGAACTTGCTGAGCTTGGTTTATGGCTATGATAGTTTTCGAGATGGGCAGCTGGAGGCAATCAAGATGGTTCTTACCGGGAAGTCTACCATGCTTATTTTGCCAACTGGTGCAGGGAAGTCACTCTGCTATCAGCTGCCTGCCTTGATTTTGCCTGGGATTACCCTAGTTGTCAGTCCATTGGTGGCCTTGATGATTGATCAGCTAAGGCAACTGCCCCCTGTGATTAGGGGTGGTTGTTTAAGCAGCAGTCAGACATCTGAGGAAGCAGCTGAAACACTCAACCAGCTTAGACAAGGTGCAGTGAAGGTGCTTTTTGTTTCCCCAGAGCGCTTCCTGAATGAGGAGTTTCTGTCTGTTATTTCTGGTATGTCAGGCATCTCACTTCTTGTTGTTGATGAAGCACACTGTATTTCTGAATGGTCTCACAACTTCCGACCATCATTCATGAGACTCAGAGCATCTTTGCTCCGTAAAAGGCTTAACATAGGTACTATTCTTGCAATGACAGCAACTGCTACAAACACAACTTTAGATGCCATCATGTCTGCTCTAGATATTCCTTGCACAAATCTTATTCAAAAGGCACAACTAAGGGACAATTTTCATTTATCGGTAATGAAAGACCTTCTGGTTCTCATGAAGTCTTCTCCTTTTGCCGAAGTTCAAAGCATTATCATATACTGCAAATTTCAGTCTGAAACTGATATGATTAGCCGATACTTGAATGATAACAATATCTCGGCAAAGAGTTATCATGGTGGTATGAGTTCAAAGGAACGCAACTATGTCCAAGAGTTGTTTACCTCCAACAAGATCAGAGTGGTTGTTGCAACTGTGGCATTTGGTATGGGACTGGATAAAAGTGATGTTGGAGCTGTAATTCATTATAGTCTGCCTAAAAGTCTGGAGGAGTATGTGCAGGAGATAGGCCGTGCTGGAAGGGATGGGAGTGAGAAGAGCTCCTGTGGGAGAATATGTTCGTTAATTAAAGAATCTTCTTCACGCAAGTTTGATATGAAAGAAGAGGTGATGCTAACAATTTTGACACGCTTGGAGTTGGGAGATGTGAAGTACTTGTATTTACTTCCACAGATAAATGCAACTTGCAATTTGACATTTCATAAGACTCCCCCACCTATGCTTGCCCAAAGGAATTCTGCTGTTGCTGTTATTCTGAAGAGATCTGAATATAAGCAAGGGCTGTATGTTTTTGACATTCCATCCGTGGCAAATGACGTGGGGATTACAGCAGTTGAGTTAACAAATCAGTTGTACAATCTCAAGTTAACGGGAGAAATAACTTATGAAATGAAGGACTTGGCCTACTGTTATAAGATTGTTCAAGTCCCGACGGACTTTTTCTCGCTATCAACAGCTGTTACCCAATGGTTATCAGATGTTGAAAGTTGTAAGGTACAAAAGATAGATGTAATGCTTAATGCTGCAAATTTTGCCATAAATTTATGTGACAAGATGCATGGTTGCAGTGATAACAATCACACACCATGCTTGCAAACGAAAATATTGGATTACTTTGCTGGAGTTGATGATAACAATGATTCCTGCAAAAAAATTGGTCAAAGCAGCCCTTTCCTGCGGGCTGATATTAAGGTCTTTCTTCAGAGCAATTCACAAGCAAAATTTACACCAAGAGCTGTGGCCAGGATAATGCATGGAATTGCAAGCCCTGCATATCCTTCTACCATTTGGTGTAGAACCCATTTCTGGGGAAGGTATACACATATAGACTTCAAGGTGGTGATGGAAGCAGCAAAGGCAGAACTGAAGAATTTGGTTGGAAAAGATACGCTCTAG 2673 0.4504 MDSDSDSDGSHVSATPPRRATPSPPPPQPPPPPQPPRVPSGKSRIRTKTSSSKKRPSAPDKTQSKHDPLPEPSHQLQDPFSLPTALPFQIRRSSDCDPAPPSTSQPLETVPAGFFSKSASFSKIRRHSISFEASGNEPLLDSTSNLGTNVGLDYALKGTSGKRQHPNLIGANAPLPAVKLRKCGGEGNFVKLNLSGGGKRRKFMNKGYKKSGRFSGGRRYTRSRGKVGRQGKEDQEELGFDDEEGLVTESGQKKQKRTCRASEVQLKLVDEAVSAAQAEPSDENLVNLLSLVYGYDSFRDGQLEAIKMVLTGKSTMLILPTGAGKSLCYQLPALILPGITLVVSPLVALMIDQLRQLPPVIRGGCLSSSQTSEEAAETLNQLRQGAVKVLFVSPERFLNEEFLSVISGMSGISLLVVDEAHCISEWSHNFRPSFMRLRASLLRKRLNIGTILAMTATATNTTLDAIMSALDIPCTNLIQKAQLRDNFHLSVMKDLLVLMKSSPFAEVQSIIIYCKFQSETDMISRYLNDNNISAKSYHGGMSSKERNYVQELFTSNKIRVVVATVAFGMGLDKSDVGAVIHYSLPKSLEEYVQEIGRAGRDGSEKSSCGRICSLIKESSSRKFDMKEEVMLTILTRLELGDVKYLYLLPQINATCNLTFHKTPPPMLAQRNSAVAVILKRSEYKQGLYVFDIPSVANDVGITAVELTNQLYNLKLTGEITYEMKDLAYCYKIVQVPTDFFSLSTAVTQWLSDVESCKVQKIDVMLNAANFAINLCDKMHGCSDNNHTPCLQTKILDYFAGVDDNNDSCKKIGQSSPFLRADIKVFLQSNSQAKFTPRAVARIMHGIASPAYPSTIWCRTHFWGRYTHIDFKVVMEAAKAELKNLVGKDTL 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g04515 890 SMART ultradead3 294 490 IPR014001 -
Adu03g04515 890 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 288 608 IPR004589 GO:0004386|GO:0006310
Adu03g04515 890 CDD DEXHc_RecQ4-like 286 479 - -
Adu03g04515 890 MobiDBLite consensus disorder prediction 1 111 - -
Adu03g04515 890 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 338 611 IPR027417 -
Adu03g04515 890 MobiDBLite consensus disorder prediction 53 72 - -
Adu03g04515 890 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 491 645 IPR001650 -
Adu03g04515 890 Pfam DEAD/DEAH box helicase 300 462 IPR011545 GO:0003676|GO:0005524
Adu03g04515 890 Gene3D - 476 636 IPR027417 -
Adu03g04515 890 MobiDBLite consensus disorder prediction 18 39 - -
Adu03g04515 890 MobiDBLite consensus disorder prediction 96 111 - -
Adu03g04515 890 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 413 422 IPR002464 -
Adu03g04515 890 PANTHER DNA HELICASE RECQ FAMILY MEMBER 55 814 - -
Adu03g04515 890 CDD SF2_C_RecQ 484 608 - -
Adu03g04515 890 Gene3D - 265 475 IPR027417 -
Adu03g04515 890 MobiDBLite consensus disorder prediction 212 238 - -
Adu03g04515 890 Pfam Helicase conserved C-terminal domain 507 601 IPR001650 -
Adu03g04515 890 PANTHER ATP-DEPENDENT DNA HELICASE Q4 55 814 - -
Adu03g04515 890 SMART helicmild6 521 602 IPR001650 -
Adu03g04515 890 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 306 476 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g04515 Adu-Chr3 134518119 134524335 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g04515 511 602 Eukaryotic Initiation Factors Gene Family AT3G19760 35.870 1.39e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g04515 K10730 - gmx:100811214 1104.35