Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g04494 ATGGGTCGCCGTAAGATCGAGATTAAGATGGTGAAAGACACCAACACAAGGCAGGTCACATTCTCCAAACGAAGAACCGGTCTTTTCAAGAAAGCCAACGAACTTTCTATTCTCTGCGGATCCGAGGTTGCTATTGTGGTCTTCTCTCCGGGAAACAAGCCTTACTCCTTCGCCCACCCCACCGTCGACGCTGTCGTCGCCAAGTTCCTCATCCAAAACCCTGAGCGGCGTGGTGGAGGCGATGATGACGAGGACAGCAGCGATGATAATGATGGTGGTGCTGATCCAGACACCTTGGACCATTTGTTCAAGGAGACTGTGGAACAGGTGCGCATGGAGGAAAAAGTGGGCGCGGCGCGTGAAAAGGCTATCAAAGAGGTTGTTGAGGGAGGGAAGAAATGGTGTGAGATTGGTGAATTGAGTGAACTGAAAAGGAGGGTGAGGGAGCGTCTTACTATGTTGGAGACGGTTGAGTCCATGATGCTTCTTTCACATGAACCTGTGGTGATGGGAACCACTGTGGATAACCATCTTTCTAAAATCAAGAGGAGAAGATCAATGATGTAA 567 0.4974 MGRRKIEIKMVKDTNTRQVTFSKRRTGLFKKANELSILCGSEVAIVVFSPGNKPYSFAHPTVDAVVAKFLIQNPERRGGGDDDEDSSDDNDGGADPDTLDHLFKETVEQVRMEEKVGAAREKAIKEVVEGGKKWCEIGELSELKRRVRERLTMLETVESMMLLSHEPVVMGTTVDNHLSKIKRRRSMM 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g04494 188 Gene3D - 14 77 IPR036879 GO:0003677|GO:0046983
Adu03g04494 188 CDD MADS_MEF2_like 2 70 IPR033896 GO:0000977|GO:0045944
Adu03g04494 188 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Adu03g04494 188 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 170 - -
Adu03g04494 188 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Adu03g04494 188 SUPERFAMILY SRF-like 1 73 IPR036879 GO:0003677|GO:0046983
Adu03g04494 188 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Adu03g04494 188 Coils Coil 178 188 - -
Adu03g04494 188 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Adu03g04494 188 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Adu03g04494 188 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Adu03g04494 188 MobiDBLite consensus disorder prediction 74 99 - -
Adu03g04494 188 PANTHER MADS BOX PROTEIN 2 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g04494 Adu-Chr3 134281127 134281693 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g04494 1 164 Type I MADS-box Gene Family AT2G34440 41.209 1.10e-33 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Adu03g04494 SRF-TF 5.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g04494 - - adu:107481967 337.421