Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g04479 ATGGTTGTCATCGACGGCGCTTCAAGCCTCGAAGCTCTGTTTCGCGACATGGCCGTTAACAACAGCAGCAAAGCCGGAAGACCTCCAGCTACGAAGGAATCCATTGACGCCATGCCGAGCTTTGTAATCAAAGAAGGTGAAGTTGAAATAGGAGAGTGTGTTGTGTGTTTGGAGGATTTTGGTGTTGGTGCTTTGGTTAAGGAGATGCCATGTAAGCACAGGTTTCATCCGAATTGCATTGAGAAGTGGCTTGGGATGCATGGAACTTGCCCTGTTTGTATGTACGAGATGCCGGTTGAGGAAAAAGATGAAGGAAAGAAGAGGGATAGTGaaggagaagaagaacaagaaggaggagaaagagagaggagaaagacagcggcgaagaatctagagttttag 402 0.393 MVVIDGASSLEALFRDMAVNNSSKAGRPPATKESIDAMPSFVIKEGEVEIGECVVCLEDFGVGALVKEMPCKHRFHPNCIEKWLGMHGTCPVCMYEMPVEEKDEGKKRDSEGEEEQEGGERERRKTAAKNLEF 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g04479 133 MobiDBLite consensus disorder prediction 100 133 - -
Adu03g04479 133 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 14 109 - -
Adu03g04479 133 SMART ring_2 53 93 IPR001841 -
Adu03g04479 133 ProSiteProfiles Zinc finger RING-type profile. 53 93 IPR001841 -
Adu03g04479 133 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 100 IPR013083 -
Adu03g04479 133 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MPSR1 14 109 - -
Adu03g04479 133 SUPERFAMILY RING/U-box 52 99 - -
Adu03g04479 133 CDD RING-H2_PA-TM-RING 52 94 - -
Adu03g04479 133 Pfam Ring finger domain 52 93 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g04479 Adu-Chr3 134082551 134082952 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g04479 1 113 C3H Transcription Factor Family AT1G26800 54.867 6.07e-37 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g04479 - - adu:107481928 258.455