Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g04478 ATGGATCATATCAATACCACCAAAGGCTTCACTCTTGAGCATCTTCAATATCTTGTGGTTGATGAAACGGATCGGCTACTCCGTGAGGCCTACCAGTCATGGCTACCTGCTGTGCTTGAATCGGTGCAGTTGAATGAGGATAACAGTTTTGAACCCAGTGATTCGTTTTTACCTTGTTCTATGGGTGTGTTAACAACCAGAAGAAGATGTGGAGTTGAAAGGGGTTTCAAGGATAAGCCCTACCCTAGGCTGGCAAAGATTGTCCTGTCTGCGACAATAACTCAGGACCCAGGCAGGCTTGTTCAGCTTGAGTTGCATCACCCTTTGTTCCTGAGAGCTGGGCCAATGCGTTATCGACTCCCAGAAAATCTACAATCCTTCAAATTGATCTGTGAAAGAAAGGTCAAACCCTTGTATTTGGTTGCCCTTTTAAAATCACTAGAAGGAGAAAAATGCATAATTTTTACAAAATCTGTGGAATCTACACATCGTCTCTGCAAATTGCTTAATTGTTTTGGAGATCTGCAAATTGATATCAAGGAGTACTCTGGTCTTCAGCATCAACGTGTAAGAAGTAAGACCCTGAATAATTTTCGGAAAGGCGAGTTTCAAGTGCTTGTATCTTCTGATGCAATGACTCGTGGAATGGATGTGGAAGGTGTAAGAAATGTCATTAACTATGACATGCCCAAATACGTGAAGACCTACGTTCATCGGGCTGGTAGGACTGCCCGGGCTGGCCAGACTGGGCGCTGCTTCACATTGATGTCCAATGATGAGGTACGACAATTTAAGAAGTTGATGCAAAAGGCTGAGGCTAGTTCTTGCCCCGAGCACATCATTCAATCCAGTTTGATTGAAGCACTGCACTCTACCTATGAATCAGCATTGAAAAAATTCAAGGAGAAGATTTCGAAGGCACGAAAGAAGGCAAATGATTAG 942 0.4342 MDHINTTKGFTLEHLQYLVVDETDRLLREAYQSWLPAVLESVQLNEDNSFEPSDSFLPCSMGVLTTRRRCGVERGFKDKPYPRLAKIVLSATITQDPGRLVQLELHHPLFLRAGPMRYRLPENLQSFKLICERKVKPLYLVALLKSLEGEKCIIFTKSVESTHRLCKLLNCFGDLQIDIKEYSGLQHQRVRSKTLNNFRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYVKTYVHRAGRTARAGQTGRCFTLMSNDEVRQFKKLMQKAEASSCPEHIIQSSLIEALHSTYESALKKFKEKISKARKKAND 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g04478 313 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 111 IPR014001 -
Adu03g04478 313 PANTHER RNA HELICASE 1 297 - -
Adu03g04478 313 Pfam DEAD/DEAH box helicase 2 97 IPR011545 GO:0003676|GO:0005524
Adu03g04478 313 Pfam Helicase conserved C-terminal domain 136 247 IPR001650 -
Adu03g04478 313 SMART helicmild6 163 247 IPR001650 -
Adu03g04478 313 Gene3D - 1 114 IPR027417 -
Adu03g04478 313 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 139 297 IPR001650 -
Adu03g04478 313 PANTHER ATP-DEPENDENT RNA HELICASE DDX51 1 297 - -
Adu03g04478 313 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 269 IPR027417 -
Adu03g04478 313 CDD SF2_C_DEAD 125 255 - -
Adu03g04478 313 Coils Coil 290 310 - -
Adu03g04478 313 Gene3D - 124 313 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g04478 Adu-Chr3 134067872 134072373 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g04478 72 269 Eukaryotic Initiation Factors Gene Family AT3G19760 25.854 9.30e-17 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g04478 K14807 - vvi:100258315 444.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g04478 03 134067872 134072373 Adu03g04478 03 134067872 134072373 ECH