Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Adu03g04403 | ATGGTTGCTCAACAGCCTCAGCCTCAGCCTCAGCCACAGCCACAGCCACAGCCACAGCAACCTCCTTCGTCTGCACAAGACGAGGCTTTGAAGAGGAACACCGATTGCGTCTACTTTCTCGCATCTCCTTTGACATGCAAAAAGGGAAATGAATGTGAGTACCGCCATAGTGAGTATGCTCGGGTAAATCCTAGAGATTGCTGGTATTGGTTGAATGGAAATTGCTTGAACCCCAAATGTGCTTTCCGTCATCCGCCACTTGATGGCTTGTTAGGTTCACCGGCAGCCACTGCTGCTGGGCCATCTGTTCCCTCGTCACAGATTGCAGCGACACCTGCAGCACCTGCAGCGCCTTATAATTCTACTAAACAAGCTGTCCCTTGTATTTTCTTTCAGAAGGGTCTTTGCTTAAAAGGTGACAGATGTGCTTTCTTGCATGGACCAAATCCTACTGCTGGTAACAAAGCTGTTAATCAGGTCCCAGTGTCTAACCAGGGAACTGAGACTCCAAATCTTAAGAAGCCATTTGGCAGCAGAGATAAAAATGCACAAGAAAGGAGAAGCTCCCAAGGAAACATTCCAAAATTAGTTGGAGGTCTTGAAATTAAACCTTCCCCAAAGGTCGAAACTGCTCCACAAAGAAATAATTTTGAATTGGTGAAGGAGAAGCATGTGGCACCACCACCTGCAGGATTTGATGATGAGGCTTCAAGATTTAAAATGAGAAGTATTTCCCCAGTGGCTAACGGGCCTACTGCTGCCCGTTCAAATCGACTGCATCAAGTCCGTATGCCAGATGATAATAGTTTCCACAATGGTAAGGACAGTGATGAATTCCTCAGAGAATCCTCTCCTGGATTTGATGTTCTTGTAGCTGACGAGCTTAGAAATTCTGATTACTATCATGGGGAAGATGAATTTGGTAATGCAAGAGGTCCAGATGAAAGGAACTTGGACTCTTTGAATGATTATGACTTGGGGCATTCTGCTGATTATGGTTTAGCGCGTGATATTGATCAAGAAAGATTTCGTGTTCCTCAATCCTACGACTCATATGATCACATGCAGGAGCCATACGCTTGGGAGCAGCATAGAAAGGCCCCAGGCCATTTAGAAAGAAGGTCTCACCGCAGATCTGATAGTCCTGACAATGTAGAGGTCTCAGATCTCCGACATCGTTTATCTAAGCGCAGGAGGGTTAACGGTTTGAAATCTGTTGTCTCTAATGACTTTGACAGCCATGGTGATCAACAAAGTCACCACTCTAGGAAGGATTCGCATCAGTTACCTTTGAATGATCGCTTCCGAGGCAGAATAAAACTTCCAGCAAGTGGTGCCGACGATAACCCAGAGAGGGAATCAGACAGAGGAAGAATTAGGAGCAGATTATCAACTGGAAGGTTGCCAACCCCGCACCAAGGAAGGCTCCAAGACAGAATTAGAGGAAGGGTGCAGGATGATGAGAGGAGAAATTTCAGGGAACGATCAATAGGGAGAGAAGTAATGGGGGACAGAAGTGATTTTTCCGGACCCAAAAGCCTTGCTGAACTTAAGAATGGGAGGAGCTCTGATTATAAGGAGCATCAATCACTGGGAAAGAGGAAGAGTCTAAGGGAACAGTCACAATCAGAAGGTGATTTTCAGTTTGATGGTCCAAAACCTCTGAGTGAAATTCTGAAGGAGAAGAGAAGAGTTGGAGCTGGTGTATCCTCACAGAGTGAAATTGTTCATAGCTCTGATGATACAGCTGTCACAAACATGCAAAATGGAGCATTGCCTGAGGCCAAGGAAGGTGCCAAGAACCACTCACTAATTAATGAAGAAGAAACCAAGCTTCAGGACACTGATACAGCTGGAAGGGAGATAGATAATAATGAGGGGAATCGTGATCAGTCGTATGAGGATGGAATGATCTATGATGAAGCCGCAGAGGAACAGGAGTATGAAGGCGATGATCAGAGGGATGGAGAGTATGATTATGAGCAAGTTGATGAGGGGGAATATGATTATGAACAAGTTGATGAGGGAGAAAATCCAGAGCAAGAATACATGGAGGATGAAGATGGGGATGACTTTGCTAAGAAGATTGGTGTGATGACTACATAA | 2106 | 0.452 | MVAQQPQPQPQPQPQPQPQQPPSSAQDEALKRNTDCVYFLASPLTCKKGNECEYRHSEYARVNPRDCWYWLNGNCLNPKCAFRHPPLDGLLGSPAATAAGPSVPSSQIAATPAAPAAPYNSTKQAVPCIFFQKGLCLKGDRCAFLHGPNPTAGNKAVNQVPVSNQGTETPNLKKPFGSRDKNAQERRSSQGNIPKLVGGLEIKPSPKVETAPQRNNFELVKEKHVAPPPAGFDDEASRFKMRSISPVANGPTAARSNRLHQVRMPDDNSFHNGKDSDEFLRESSPGFDVLVADELRNSDYYHGEDEFGNARGPDERNLDSLNDYDLGHSADYGLARDIDQERFRVPQSYDSYDHMQEPYAWEQHRKAPGHLERRSHRRSDSPDNVEVSDLRHRLSKRRRVNGLKSVVSNDFDSHGDQQSHHSRKDSHQLPLNDRFRGRIKLPASGADDNPERESDRGRIRSRLSTGRLPTPHQGRLQDRIRGRVQDDERRNFRERSIGREVMGDRSDFSGPKSLAELKNGRSSDYKEHQSLGKRKSLREQSQSEGDFQFDGPKPLSEILKEKRRVGAGVSSQSEIVHSSDDTAVTNMQNGALPEAKEGAKNHSLINEEETKLQDTDTAGREIDNNEGNRDQSYEDGMIYDEAAEEQEYEGDDQRDGEYDYEQVDEGEYDYEQVDEGENPEQEYMEDEDGDDFAKKIGVMTT | 701 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Adu03g04403 | 701 | MobiDBLite | consensus disorder prediction | 600 | 636 | - | - | |
| Adu03g04403 | 701 | SUPERFAMILY | CCCH zinc finger | 123 | 147 | IPR036855 | GO:0046872 | |
| Adu03g04403 | 701 | MobiDBLite | consensus disorder prediction | 571 | 589 | - | - | |
| Adu03g04403 | 701 | ProSiteProfiles | Zinc finger C3H1-type profile. | 122 | 149 | IPR000571 | GO:0046872 | |
| Adu03g04403 | 701 | SMART | c3hfinal6 | 31 | 58 | IPR000571 | GO:0046872 | |
| Adu03g04403 | 701 | SMART | c3hfinal6 | 63 | 86 | IPR000571 | GO:0046872 | |
| Adu03g04403 | 701 | SMART | c3hfinal6 | 122 | 148 | IPR000571 | GO:0046872 | |
| Adu03g04403 | 701 | PANTHER | ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING | 15 | 700 | - | - | |
| Adu03g04403 | 701 | MobiDBLite | consensus disorder prediction | 519 | 541 | - | - | |
| Adu03g04403 | 701 | MobiDBLite | consensus disorder prediction | 365 | 701 | - | - | |
| Adu03g04403 | 701 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
| Adu03g04403 | 701 | MobiDBLite | consensus disorder prediction | 155 | 208 | - | - | |
| Adu03g04403 | 701 | Gene3D | - | 22 | 87 | - | - | |
| Adu03g04403 | 701 | Gene3D | - | 116 | 181 | - | - | |
| Adu03g04403 | 701 | MobiDBLite | consensus disorder prediction | 365 | 393 | - | - | |
| Adu03g04403 | 701 | PANTHER | ZINC FINGER CCCH-TYPE-CONTAINING 11A | 15 | 700 | - | - | |
| Adu03g04403 | 701 | MobiDBLite | consensus disorder prediction | 7 | 21 | - | - | |
| Adu03g04403 | 701 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 126 | 148 | IPR000571 | GO:0046872 | |
| Adu03g04403 | 701 | MobiDBLite | consensus disorder prediction | 474 | 506 | - | - | |
| Adu03g04403 | 701 | MobiDBLite | consensus disorder prediction | 155 | 172 | - | - | |
| Adu03g04403 | 701 | ProSiteProfiles | Zinc finger C3H1-type profile. | 30 | 59 | IPR000571 | GO:0046872 | |
| Adu03g04403 | 701 | ProSiteProfiles | Zinc finger C3H1-type profile. | 61 | 87 | IPR000571 | GO:0046872 | |
| Adu03g04403 | 701 | MobiDBLite | consensus disorder prediction | 637 | 687 | - | - | |
| Adu03g04403 | 701 | Pfam | Zinc-finger containing family | 31 | 85 | IPR041686 | - | |
| Adu03g04403 | 701 | MobiDBLite | consensus disorder prediction | 445 | 462 | - | - | |
| Adu03g04403 | 701 | MobiDBLite | consensus disorder prediction | 414 | 434 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Adu03g04403 | Adu-Chr3 | 133014151 | 133017881 | Dispersed |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C3H | Adu03g04403 | zf-CCCH_3 | 7.7e-12 | CL0537 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Adu03g04403 | - | - | gmx:100787836 | 926.391 |