Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g04351 ATGGCAGAAGCGGTGGGGCCTTCATCGCCGGCGGCAATCGCGGCAAATCGTCGACGCGTGACGAGCGCGCCGGAGAACATCGACTTCGAGACGACGGAGGGCGTAAAGGCTATCGCGAGTTTCGAGGAAATGGGGATCAAGGAGGAGCTCCTCCGCGGGATCTACCAGTACGGCTTCGAGAAGCCCTCGGCCATTCAGCAACGCGCCGTCATGCCAATCATCCAGGGTCGTGACGTCATCGCCCAGGCCCAGTCGGGCACCGGCAAGACCTCCATGATCGCCCTCACCGTCTGCCAGCGCGTCGAGACTTCCATACGCGAGGTTCAGGCGTTGATATTGTCGCCAACGAGGGAGCTGGCGGCGCAGACGGAGAAGGTGATATTGGCGATTGGGGATTTCATAAACATTCAGGCGCACTCGTGGGTCTGTGACATGATCAAAAGGAGGACTTTGCGCACCAGAGATATCAAGATGCTGGTTCTGGATGAATCCGACGAGATGTTAAGCAGAGGGTTTAAGGATCAAATTTATGATGTGTATAGGTATCTGCCACCAGAGCTTCAGGTTGTCTTGATTTCTGCCACTCTCCCTCATGAAATACTGGAGATGACAAGTAAATTCATGACAGATCCTGTAAGGATCCTTGTAAAACGTGATGAATTGACACTGGAGGGCATCAAGCAATTCTTTGTTGCAGTTGAACGGGAAGAATGGAAGTTTGATACTCTATGTGATCTTTATGATACCCTTACTATCACGCAGGCTGTTATATTTTGTAACACTAAGCGAAAGGTGGATTGGTTAACTGAAAAAATGCGTAACAATAATTTCACTGTATCGGCAATGCATGGAGACATGCCGCAGAAAGAAAGAGATGCAATTATGGCAGAATTTCGTGCTGGAACTACTCGTGTGCTAATAACAACGGATGTCTGGGCACGTGGCCTTGATGTACAGCAGGTTTCTCTAGTCATCAACTATGACCTCCCAAATAATCGTGAGCTCTACATTCATCGAATAGGCCGCTCTGGGCGTTTTGGACGCAAGGGTGTTGCAATAAACTTTGTCAAGAGTGACGATATCAAGATTTTGAGAGATATTGAGCAATATTATAGTACTCAGATTGATGAAATGCCAATGAACGTGGCTGATCTTATATAA 1161 0.4858 MAEAVGPSSPAAIAANRRRVTSAPENIDFETTEGVKAIASFEEMGIKEELLRGIYQYGFEKPSAIQQRAVMPIIQGRDVIAQAQSGTGKTSMIALTVCQRVETSIREVQALILSPTRELAAQTEKVILAIGDFINIQAHSWVCDMIKRRTLRTRDIKMLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEMTSKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRNNNFTVSAMHGDMPQKERDAIMAEFRAGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g04351 386 Pfam DEAD/DEAH box helicase 64 140 IPR011545 GO:0003676|GO:0005524
Adu03g04351 386 SMART helicmild6 266 347 IPR001650 -
Adu03g04351 386 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 107 369 IPR027417 -
Adu03g04351 386 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 39 67 IPR014014 GO:0003724
Adu03g04351 386 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 70 214 IPR014001 -
Adu03g04351 386 Gene3D - 24 141 IPR027417 -
Adu03g04351 386 CDD SF2_C_DEAD 226 356 - -
Adu03g04351 386 Gene3D - 222 386 IPR027417 -
Adu03g04351 386 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 225 386 IPR001650 -
Adu03g04351 386 Pfam Helicase conserved C-terminal domain 239 347 IPR001650 -
Adu03g04351 386 Gene3D - 142 221 IPR027417 -
Adu03g04351 386 SMART ultradead3 58 229 IPR014001 -
Adu03g04351 386 PANTHER BNAA01G25900D PROTEIN 26 140 - -
Adu03g04351 386 PANTHER BNAA01G25900D PROTEIN 142 379 - -
Adu03g04351 386 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 26 140 - -
Adu03g04351 386 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 142 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g04351 Adu-Chr3 132482607 132485806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g04351 29 386 Eukaryotic Initiation Factors Gene Family AT3G19760 81.771 0.0 650
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g04351 K13025 - gmx:100795032 679.478